Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20gracile_20[genbank_20GCA_5F001600335.1_202016-03-01] 17 sequences; 24,114,851 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq5 93.3 2e-13 seq3 87.8 7e-12 >seq5 Length=3690501 Score = 93.3 bits (102), Expect = 2e-13 Identities = 213/318 (67%), Gaps = 2/318 (1%) Strand=Plus/Minus Query 88974 CGCAAGTTCACCGCCGTGGGCCGAGAGTGCAGGGACAAGGCCGTGGTCGTGGTGGACGAC 89033 |||||| ||| |||| || | |||| |||||| | || | | || |||||| Sbjct 3241149 CGCAAGCTCAACGCCATGCCTCTGGAGTTTGCCGACAAGACTGTTCTGCTCGTTGACGAC 3241090 Query 89034 TCTGTCGTGCGCGGCACCACATCCAAGTTCATAATCGACCTCCTTCGCAAGTCTGGCGCC 89093 || | || || || |||||||| ||| || ||| | | ||| | ||| ||| Sbjct 3241089 TCGATTGTCCGTGGTACCACATCAAAGGAGATTATCCAGATGGCCCGCGATGTTGGAGCC 3241030 Query 89094 ACCAAGGTCTACCTCGCTTCTTGCTCTCCCCCGATCCGTTACCCCAACGTGTACGGCATC 89153 | ||| |||| || ||| | ||||| ||||| |||||||||||||||||||| Sbjct 3241029 AAGCGTGTCATTGTCGCGTCGTGCGCGCCCCCCATCCGCTACCCCAACGTGTACGGCATT 3240970 Query 89154 GACATACCGTCGGCCAAGGAGCTCATTGCTTCTGGTCGCACCGAGC-ACGAGGTGGCTCT 89212 ||||| |||||| | ||||| | || | || |||| ||| | | ||| | || Sbjct 3240969 GACATGCCGTCGCAGCACGAGCTGGTCGCGTACGGCCGCA-CGACCGAGGAGATTGCCGA 3240911 Query 89213 CCTCCTCGGAGCCGACCAGGTCATCTATCAGAGTGTCGACGACTTGCAAGCGGCCTGTCG 89272 | | | || ||||||| |||||||| |||| |||| ||| | | | | ||||| Sbjct 3240910 GCACATTGGCGCCGACCTCGTCATCTACCAGACGCTCGAGGACCTCGTCGAGTCGTGTCG 3240851 Query 89273 CCAGTTCAATCCCTCCAT 89290 |||| |||| ||| |||| Sbjct 3240850 CCAGGTCAACCCCGCCAT 3240833 >seq3 Length=4554691 Score = 87.8 bits (96), Expect = 7e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 349073 GCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCG 349132 |||| || ||||||||||| | |||| ||||| || |||||| | | |||||| ||| Sbjct 4119875 GCGTTGATAATCTCCTTGATACGCGGCACACCCAGCGTGACGTTCATCGACGCGACTCCG 4119934 Query 349133 GCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTG 349185 || || ||||| |||| ||| |||| |||||| |||||| ||||| |||| Sbjct 4119935 GCGAAATGGAAAGTCTTGAGCGTCATCTGCGTTCCGGGCTCTCCGATCGACTG 4119987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084738734842566