Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3 289 2e-73 seq6 179 3e-40 seq1 84.2 2e-11 >seq3 Length=3131490 Score = 289 bits (320), Expect = 2e-73 Identities = 627/929 (67%), Gaps = 12/929 (1%) Strand=Plus/Minus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 || |||||||| || || ||||||||||| || | |||||| || || | ||||||| Sbjct 1592774 GGGAGGGCAAGGGAGGCAAGGTTGCAGACGGCGACCTCGTCGGGGGCCGAGTACTCGATG 1592715 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121 || || ||||| || || | |||||||| | | ||| || || |||||| Sbjct 1592714 ATCTCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTTGACTTGCGG 1592655 Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181 ||| || |||||||| | |||| | || || ||||| |||| ||| | |||| Sbjct 1592654 TTGGCAGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCGAGGATG 1592595 Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTA-CCTTTGCGTTCGTAATG 66240 ||| |||||| | ||||| | || | | | |||| || | || ||||| | Sbjct 1592594 GCGAACCAAAGCTTCTGAGCCTTGATGGT-CTTGCGACCCTTGCCCTCACGCTCGTACTT 1592536 Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACCCCAT--ACTTCGGACAGACATGGACACTTGTGT 66298 ||||||||| || || | | || | || ||||| || | || |||| | Sbjct 1592535 CTCGTAGAGGGCCTCAAAC--TCCTCCGAGTGGACGTCGGAAAGGCCGGGGCACTCGGCG 1592478 Query 66299 GGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATC 66358 || ||||| || | ||| ||||| || || ||||| ||||| || || || | ||| Sbjct 1592477 GGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGGCGCATGAAGAGGTCGGAGATC 1592418 Query 66359 CAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG 66418 ||||||||||||||||| || || || || |||||| ||||||| || ||||| | | Sbjct 1592417 CAGAGGGCGTAGAAGAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGAAGG 1592358 Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478 |||||||| || |||| |||||| ||||| || || ||||||||||| || | || Sbjct 1592357 TCGAGGAAGTCGAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCAGGG 1592298 Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGT 66538 || ||| |||||| |||||||| || || || || | || | || | ||| || Sbjct 1592297 CGCTTGTTGCCACCCTGGTCGACATAACGGGCAGTGGCGTCGTAGGCGCGGAGCATGGGA 1592238 Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCG 66598 || | ||||| || | ||| |||||||| | ||| || || || || || | | Sbjct 1592237 ACAATACCGTTCGAATAGCCGTTGGTGCCAGCAATGTACGAGCCCTTAGCACGAATGTTG 1592178 Query 66599 TGAACATTCAGACCAATACCACCGGCCGTCTTCGAGA--TGGCAGCACAATCGGCCACTG 66656 |||| | ||||||||||| ||||| ||||| |||| ||| ||| | || Sbjct 1592177 TGAATGTGGAGACCAATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGGGTG 1592118 Query 66657 TCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTT 66716 || | | ||||||||||| |||||| |||| |||| | ||| |||| || | | Sbjct 1592117 TC--GTAGATGCCGTCAATCGAGTCATCCTTCATGGCGACAAGGAAGCACGACGACATCT 1592060 Query 66717 GGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAG 66776 |||| | ||| || |||| ||||||||| || | ||||| || |||||| | | Sbjct 1592059 GGGGGTGGGGGGTACCGGCGTTGAAGAGGGTAGGGGAGGCGTGGGTGAAGTAACGCTCCG 1592000 Query 66777 ACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTG-CA 66835 ||||| ||||| ||||| ||||| |||||||| ||||| || || || | | | Sbjct 1591999 ACATGAGGTTGTAGGTCTCAATGACCTTGTCAATGTTGTCGCCGTGGATACCAATCGAGA 1591940 Query 66836 CATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAG 66895 || ||||| | | || || || || ||| | | | | | ||| | | | ||| Sbjct 1591939 CA-CGCATGATCATGTGCTGGGGACGCTCGGCGACCTTGCCGTCGATGCGGAGGAGGTAC 1591881 Query 66896 GAGCGTTCCAGGGTCTTGATACCAAAGTA 66924 ||||| || |||||||||| ||| ||||| Sbjct 1591880 GAGCGCTCGAGGGTCTTGAAACCGAAGTA 1591852 >seq6 Length=2644601 Score = 179 bits (198), Expect = 3e-40 Identities = 478/721 (66%), Gaps = 31/721 (4%) Strand=Plus/Plus Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272 || || || ||||| |||||||| |||||||| ||||| | | || || ||| || | Sbjct 75237 GCCTTTTTCGCCGCGTCGGACGGAATCGTCAACGAGAACCTCGTCGAGCGCTTCT-GCGG 75295 Query 61273 -GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT 61331 ||||| || | | ||||| ||||||||||||||||| |||||||| | Sbjct 75296 CGAGGTCCAGATTGCAGAGGCCAAGACCTTCTACGGCTTCCAGATCATGATGGAGAACAT 75355 Query 61332 CCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA----GCGGGCGGAAC 61387 ||||||||||| ||| |||||||||| || |||||| | || || || | Sbjct 75356 CCACTCGGAGACCTACTCGCTTCTCATCGACACCTACATCCGCGACACTGCCCGCCGCCA 75415 Query 61388 GTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGG 61447 || || | ||||| ||||||||||| || || | ||| ||| || || |||| Sbjct 75416 GT--ACC--TCTTCAAGGCCATCGAGACTATTCCCTGCATTAAGAAGAAGGCCGACTGGG 75471 Query 61448 CCTTCAATTGGATCACCAGTACAACGG-CTACATTTGGTGAACGATTGCTGGCATTTGCG 61506 | || ||||||||| | ||| | | | || | || || | | || ||||| Sbjct 75472 CGCTCCGCTGGATCACC-GACGAACAGTCGTCGTTCGCCGAGCGTCTCATTGCCTTTGCT 75530 Query 61507 GTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGT 61566 | |||||||| | || ||| || ||||| ||| | ||||| ||| | ||||| ||| Sbjct 75531 GCCGTCGAGGGCATCTTCTTCTCGGGGTCGTTCGCCTCCATCTTCTGGCTCAAGAAGCGT 75590 Query 61567 GGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCAT 61626 || || |||||||| || || ||| || ||| | || || ||||||||||| | || Sbjct 75591 GGCCTCATGCCCGGACTCACATTCTCGAACGAGCTCATCTCGCGCGACGAGGGTCTCCAC 75650 Query 61627 TGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAA-TCGTCCGTCGGAG----- 61680 || ||||| ||| || || | ||| | || ||| || | Sbjct 75651 ACCGACTTTGCC----TGCC--TC-----CTCTTTGGCCACCTCCGCCGCCGCACCCACC 75699 Query 61681 --GAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTG 61738 || | | ||||| | ||||| || | || || ||||| || || || | Sbjct 75700 CCGACATTATCAACAAGATTATCAAGGAGGCCGTCAAGATTGAGCAGGAGTTCCTCACCG 75759 Query 61739 ACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAAT 61798 | || |||| ||||| |||||||||||||| || |||| ||||| ||||| | Sbjct 75760 AGGCCCTGCCTGTCTCGCTCATCGGCATGAACGCCAACCTCATGTGCCAGTACATTGAGT 75819 Query 61799 TTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACC 61858 |||| |||||||||||| | |||| | || | || ||| || || ||| |||| Sbjct 75820 TTGTCGCCGACCGTCTGCTCGTCGCCCTCGGCAACGAGAAGATGTACAACTCGACCAACC 75879 Query 61859 CATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTG 61918 | || || |||||||| ||||| |||||| | |||||| | || ||||||||| |||| Sbjct 75880 CCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGGCCAACTTTTTCGAGTCGCGTG 75939 Query 61919 T 61919 | Sbjct 75940 T 75940 >seq1 Length=5305799 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/113 (77%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 61531 GGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTC 61590 |||||||||||||| ||||| ||| | ||||| ||||| | |||| ||| || |||||| Sbjct 776380 GGATCGTTTGCCGCCATCTTCTGGCTCAAGAAGCGTGGTTTGATGCGCGGACTCACCTTC 776321 Query 61591 AGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TGTTT 61642 || ||| | ||||| |||||||| ||||| || || ||||| ||||| Sbjct 776320 TCAAACGAGCTCATATCCCGCGACGAAGGCATACACACGGACTTTGCGTGTTT 776268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567874020640