Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01] 26 sequences; 30,616,633 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq3 91.5 6e-13 seq1 84.2 9e-11 >seq3 Length=3131490 Score = 91.5 bits (100), Expect = 6e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 89107 TCGCTTCTTGCTCTCCCCCGATCCGTTACCCCAACGTGTACGGCATCGACATACCGTCGG 89166 |||| || ||| ||||||| ||||| ||||||||||| ||||| |||||||| |||||| Sbjct 1560021 TCGCCTCGTGCGCTCCCCCCATCCGCTACCCCAACGTCTACGGTATCGACATGCCGTCGC 1560080 Query 89167 CCAAGGAGCTCATTGCTTCTGGTCGCACCGAGCACGAGGTGGCTCTCCTCCTCGGAGCCG 89226 | ||||| | || | ||| |||||| | ||||| || | | | || |||| Sbjct 1560081 AGCATGAGCTTGTCGCGTTTGGGCGCACCACCGAGGAGGTCGCCGAGCACATTGGTGCCG 1560140 Query 89227 ACCAGGTCATCTATCAGAGTGTCGACGACTTGCAAGCGGCCTGTCGCCAGTTCAATCCCT 89286 ||| ||||| || |||| | || ||| | | | | ||||||||| |||| ||| Sbjct 1560141 ACCTCGTCATTTACCAGACCCTTGAGGACCTCGTCGAGTCGTGTCGCCAGATCAACCCCA 1560200 Query 89287 CCATCACGGCCTTTGAGGCCTCTGTCTT 89314 |||| | ||||| ||| ||||| Sbjct 1560201 GCATCGAGAAGTTTGACTGCTCCGTCTT 1560228 >seq1 Length=5305799 Score = 84.2 bits (92), Expect = 9e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 349061 ATCTTGGGCGTGGCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTG 349120 || ||| || | ||| || |||||||||||| | ||| | || || || |||| Sbjct 2654501 ATGTTGACCGCGACGTTGATAATCTCCTTGAGACGGGGGACACCACCAGTGACCGACTTG 2654560 Query 349121 GCCGCGACGCCGGCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATG 349180 | || ||| ||||| ||||||| || | |||||||| ||| ||| |||||| || || Sbjct 2654561 GACGAGACACCGGCGTAGTGGAAAGTGTTGAGGGTCATCTGTGTGGCGGGCTCACCAATC 2654620 Query 349181 CACTGGCCCGCGAGGATGCCTACCATCTCGCCGG 349214 ||||| | ||||| | || ||||||||| ||| Sbjct 2654621 GACTGGGCAGCGAGTGTACCGACCATCTCGGCGG 2654654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084738488582748