Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20laibachii_20[genbank_20GCA_5F001600735.1_202016-03-01]
26 sequences; 30,616,633 total letters
Query= NC_027867.1
Length=651523
Score E
Sequences producing significant alignments: (Bits) Value
seq3 91.5 6e-13
seq1 84.2 9e-11
>seq3
Length=3131490
Score = 91.5 bits (100), Expect = 6e-13
Identities = 145/208 (70%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 89107 TCGCTTCTTGCTCTCCCCCGATCCGTTACCCCAACGTGTACGGCATCGACATACCGTCGG 89166
|||| || ||| ||||||| ||||| ||||||||||| ||||| |||||||| ||||||
Sbjct 1560021 TCGCCTCGTGCGCTCCCCCCATCCGCTACCCCAACGTCTACGGTATCGACATGCCGTCGC 1560080
Query 89167 CCAAGGAGCTCATTGCTTCTGGTCGCACCGAGCACGAGGTGGCTCTCCTCCTCGGAGCCG 89226
| ||||| | || | ||| |||||| | ||||| || | | | || ||||
Sbjct 1560081 AGCATGAGCTTGTCGCGTTTGGGCGCACCACCGAGGAGGTCGCCGAGCACATTGGTGCCG 1560140
Query 89227 ACCAGGTCATCTATCAGAGTGTCGACGACTTGCAAGCGGCCTGTCGCCAGTTCAATCCCT 89286
||| ||||| || |||| | || ||| | | | | ||||||||| |||| |||
Sbjct 1560141 ACCTCGTCATTTACCAGACCCTTGAGGACCTCGTCGAGTCGTGTCGCCAGATCAACCCCA 1560200
Query 89287 CCATCACGGCCTTTGAGGCCTCTGTCTT 89314
|||| | ||||| ||| |||||
Sbjct 1560201 GCATCGAGAAGTTTGACTGCTCCGTCTT 1560228
>seq1
Length=5305799
Score = 84.2 bits (92), Expect = 9e-11
Identities = 111/154 (72%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 349061 ATCTTGGGCGTGGCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTG 349120
|| ||| || | ||| || |||||||||||| | ||| | || || || ||||
Sbjct 2654501 ATGTTGACCGCGACGTTGATAATCTCCTTGAGACGGGGGACACCACCAGTGACCGACTTG 2654560
Query 349121 GCCGCGACGCCGGCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATG 349180
| || ||| ||||| ||||||| || | |||||||| ||| ||| |||||| || ||
Sbjct 2654561 GACGAGACACCGGCGTAGTGGAAAGTGTTGAGGGTCATCTGTGTGGCGGGCTCACCAATC 2654620
Query 349181 CACTGGCCCGCGAGGATGCCTACCATCTCGCCGG 349214
||||| | ||||| | || ||||||||| |||
Sbjct 2654621 GACTGGGCAGCGAGTGTACCGACCATCTCGGCGG 2654654
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2084738488582748
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |