Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6 248 7e-61 seq7 165 6e-36 >seq6 Length=1458149 Score = 248 bits (274), Expect = 7e-61 Identities = 621/937 (66%), Gaps = 10/937 (1%) Strand=Plus/Minus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 || ||| ||||||||||| || || ||||||||||| || | |||||| |||| | Sbjct 935439 ACGAACGCGGGAAGGGCAATGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAG 935380 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 ||||||| || || ||||| || || | || ||||||| | ||| || ||| Sbjct 935379 TACTCGATGATCTCAGTGCAGAGGTTGGACGACTTGATAGTGCCCAGGTGCTGCTGGTTA 935320 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 |||||| ||| || |||||||| | ||| | || || ||||| |||| | Sbjct 935319 GACTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAAGGGGCCACCAGTCTCGGTCTGGGCC 935260 Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTA-CCTTTGCG 66231 |||| ||||||| ||| || | ||||| | || | | | |||| || | || Sbjct 935259 TCAAGGATGGCGAACCAGAGCTTCTGGGCCTTGATGGT-CTTGCGACCCTTGCCCTCACG 935201 Query 66232 TTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCAT--ACTTCGGACAGACATGGA 66289 ||||| | | ||| ||| || || | | || | || |||| |||| || Sbjct 935200 CTCGTACTTCTGGTACAGGGTCTCAAAC--TCCTCCGAGTGAACGTCGGCAAGACCAGGG 935143 Query 66290 CACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGA 66349 |||| | || ||||| || | ||| ||||| || || ||||| ||| || || Sbjct 935142 CACTCGGCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGG 935083 Query 66350 TCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTT 66409 ||||| | |||||| |||||||| || || || || || |||||| | ||||| || Sbjct 935082 TCAGGGACCCAGAGAGCGTAGAACAGGTCACGCGCGCGAACCTCCTCCTTTCCGTGGTTC 935023 Query 66410 TTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAAC 66469 ||||| | ||| ||||| || || | ||| |||||||| || || ||||||||||| || Sbjct 935022 TTGCGGAGGTCAAGGAAGTCGAAAACGTCCGCATGCCAGGGCTCAAGGTAGATGGCAAAG 934963 Query 66470 GAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGC 66529 | || || ||| |||||| ||||||||||| || ||| || | || |||| Sbjct 934962 GCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTAACGGGCGGTCGCGTCGTAGGCACGG 934903 Query 66530 AACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCC 66589 | ||| || || | ||||| || | || ||||| ||| ||||| || || || Sbjct 934902 AGCATGGGGACAATACCGTTGGAGTAACCGTTGGTTCCGGCGATGTACGAGCCCTTGGCA 934843 Query 66590 CGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGA--TGGCAGCACAAT 66647 || || | ||||| | |||||||| ||||| || ||||| |||| ||| ||| Sbjct 934842 CGAATGTTGTGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCGCAGGTC 934783 Query 66648 CGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATG 66707 | |||| | | |||||||| || ||||| |||| || | | |||| |||| | Sbjct 934782 TTGAGGGTGTC--GTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAGCACG 934725 Query 66708 AACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGT 66767 | | || || | ||| || | || ||||||||| || | |||||| || |||| Sbjct 934724 ACGACATCTGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAAGT 934665 Query 66768 AATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCC 66827 | | |||||| ||||||||||| ||||| || ||||| || || || || | Sbjct 934664 AGCGCTCGGACATGAGGTTGTACGTCTCAATGACCTTGTCGATGTTGTCACCGTGGATAC 934605 Query 66828 CGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCA 66887 ||| | | ||||| | | || || || || ||| ||| | | | || ||| Sbjct 934604 CGATGGAAACACGCATAATCATGTGCTGCGGACGCTCGGCCACCTTGCCGTCAATGCGCA 934545 Query 66888 TTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTA 66924 | || ||||| || |||||||||| ||| ||||| Sbjct 934544 AGAGATATGAGCGCTCGAGGGTCTTGAAACCGAAGTA 934508 >seq7 Length=1425097 Score = 165 bits (182), Expect = 6e-36 Identities = 348/515 (68%), Gaps = 7/515 (1%) Strand=Plus/Plus Query 61399 TTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG 61458 ||||| ||||||||||| || || | ||| ||| || || |||||| || |||| Sbjct 37274 TTCAAGGCCATCGAGACCATCCCCTGCATCAAGAAGAAGGCCGACTGGGCCCTCCGTTGG 37333 Query 61459 ATCACCAGTACAACGGCTA--CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGG 61516 || || || | ||| | |||| ||| || | | || || || | ||||||| Sbjct 37334 ATTTCCG--ACGAGCGCTCGTCCTTTGCTGAGCGCCTCATTGCGTTCGCCGCCGTCGAGG 37391 Query 61517 GTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGC 61576 || | |||||| ||| ||||||||| | ||||| ||| | ||||| ||||| || |||| Sbjct 37392 GTATCTTTTTCTCTGGCTCGTTTGCCTCGATCTTCTGGCTCAAGAAGCGTGGCCTCATGC 37451 Query 61577 CCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTG 61636 |||| || || ||| ||| ||| | || || || |||||||| | || || |||| Sbjct 37452 CCGGCCTCACTTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTG 37511 Query 61637 CTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGA 61696 | | |||| |||| | | || | | ||| ||| | | | | ||| Sbjct 37512 CCTGTCTGCTTTTCACCCA-TCTCCGCCG--TCGCCCGCACCCCAACCTCATTGAGAAGA 37568 Query 61697 TTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCAC 61756 || | || ||||| || | || |||||||| || || || || || | ||||| || | Sbjct 37569 TTATCCGCGAGGCCGTCAAGATTGAACAGGAGTTCCTTACCGAGGCGCTCCCCGTGTCGC 37628 Query 61757 TCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGT 61816 ||||||| ||||| || || |||| || || ||||| || || |||||||||||| Sbjct 37629 TCATCGGTATGAACGCCGGTCTCATGTGCCAATACATTGAGTTCGTCGCCGACCGTCTGC 37688 Query 61817 TGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACA 61876 | |||| | | || | | |||||| || ||| || || || || || ||||| | Sbjct 37689 TCGTCGCTCTTGGCAACGACAAGATCTACAACTCGACGAATCCCTTCGACTTTATGGAGA 37748 Query 61877 TGATTTCGCTGGATGGCAAGACGAATTTTTTCGAG 61911 |||| || ||| | |||||| | || || |||||| Sbjct 37749 TGATCTCTCTGCAAGGCAAGGCCAACTTCTTCGAG 37783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567704433040