Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq8 170 4e-40 >seq8 Length=1346441 Score = 170 bits (188), Expect = 4e-40 Identities = 173/224 (77%), Gaps = 21/224 (9%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 ||||||||| |||||||||||| |||||||||||||| |||||||| ||| | ||||||| Sbjct 251682 AGTTTGAGGTAATAACAGGTCTATGATGCCCTTAGATTTTCTGGGCGGCATGTGCGCTAC 251741 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 |||||| ||||| || || |||| |||| | | ||||||||||| ||| | Sbjct 251742 ACTGACTAAGCCAGCG-----ATAACCT----AAGAAGCT-TTGGTAATCTTGTGAAATT 251791 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | || ||||||||||||||| ||||||||||||| ||||||| ||| || Sbjct 251792 CAGTTGTGCTGGGGATAGAGAATTGCAATTATTGATCTTCAA----------TCAGTGAG 251841 Query 286 CGCGTG-TCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || | | ||| |||| ||| |||||||| ||||||| ||||||| Sbjct 251842 CGTGAGTTCACCAGCTCGCCTTGATTACATCCCTGCGCTTTGTA 251885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947199649536