Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01]
37 sequences; 25,989,348 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq2 259 2e-66
seq7 150 6e-34
>seq2
Length=4282893
Score = 259 bits (286), Expect = 2e-66
Identities = 265/345 (77%), Gaps = 37/345 (11%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||| | ||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 4232307 CTTTCGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCC-TTAGGACACCTGCGTTATC 4232365
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||
Sbjct 4232366 TTTTAACAGATGTGCCGCCCCAGCCCTACTTCCCACCTGACAATGTCTTCAACCCGGATC 4232425
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
||||| || ||||||| |||| | |||| || || ||||
Sbjct 4232426 AGCCCGTAAAAGACCTTACAGCCAACAGATGGGACGTTAA------TTCC---------- 4232469
Query 187 TTAAGTaaaaaaaCGATAAGGGT----AGTGGTATTTCACTTGCGCCGAAACGGCTCCCA 242
| ||||||||| ||| |||| |||||||| ||||| |||||||
Sbjct 4232470 ------AGCAAAACGATAGAGGTGCAAAGTGTTATTTCAC-----CCGAA---GCTCCCA 4232515
Query 243 -CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301
||||| |||||| || ||| |||||| ||||| ||||||||||||||||||||||
Sbjct 4232516 TTTTATTTTACACCCTCCATGTCTTTTCAC-AAGTCAAACTAGAGTCAAGCTCAACAGGG 4232574
Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTG 346
||||||||||||||||||||| | || || ||| ||||| || ||
Sbjct 4232575 TCTTCTTTCCCCGCTGATTCCCCTAATCCTGTTTCCTTGCCTATG 4232619
>seq7
Length=1599831
Score = 150 bits (166), Expect = 6e-34
Identities = 132/162 (81%), Gaps = 7/162 (4%)
Strand=Plus/Plus
Query 169 CCAGTTCCGCTTCATTGATTAAGTa-aaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG 227
|||| || || ||||||| |||| | |||||| ||| ||||||||||||||| |||
Sbjct 1590506 CCAGCTCGGCGTCATTGAATAAGAACAAAAAAAGATGGATGTAGTGGTATTTCACCCGCG 1590565
Query 228 CCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGT 287
||||| ||| |||||||||||||||| | ||| |||||||| ||| ||||||||
Sbjct 1590566 CCGAA---GCTTCCACTTATTCTACACCCTT---GTCTTTTCACAATGTCCAACTAGAGT 1590619
Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGC 329
|||||||||||||||||||||| | |||||||| |||||||
Sbjct 1590620 CAAGCTCAACAGGGTCTTCTTTGCTCGCTGATTTTGCCAAGC 1590661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635199394976
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |