Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2 259 2e-66 seq7 150 6e-34 >seq2 Length=4282893 Score = 259 bits (286), Expect = 2e-66 Identities = 265/345 (77%), Gaps = 37/345 (11%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||| | ||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 4232307 CTTTCGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCC-TTAGGACACCTGCGTTATC 4232365 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||| Sbjct 4232366 TTTTAACAGATGTGCCGCCCCAGCCCTACTTCCCACCTGACAATGTCTTCAACCCGGATC 4232425 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 ||||| || ||||||| |||| | |||| || || |||| Sbjct 4232426 AGCCCGTAAAAGACCTTACAGCCAACAGATGGGACGTTAA------TTCC---------- 4232469 Query 187 TTAAGTaaaaaaaCGATAAGGGT----AGTGGTATTTCACTTGCGCCGAAACGGCTCCCA 242 | ||||||||| ||| |||| |||||||| ||||| ||||||| Sbjct 4232470 ------AGCAAAACGATAGAGGTGCAAAGTGTTATTTCAC-----CCGAA---GCTCCCA 4232515 Query 243 -CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 ||||| |||||| || ||| |||||| ||||| |||||||||||||||||||||| Sbjct 4232516 TTTTATTTTACACCCTCCATGTCTTTTCAC-AAGTCAAACTAGAGTCAAGCTCAACAGGG 4232574 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTG 346 ||||||||||||||||||||| | || || ||| ||||| || || Sbjct 4232575 TCTTCTTTCCCCGCTGATTCCCCTAATCCTGTTTCCTTGCCTATG 4232619 >seq7 Length=1599831 Score = 150 bits (166), Expect = 6e-34 Identities = 132/162 (81%), Gaps = 7/162 (4%) Strand=Plus/Plus Query 169 CCAGTTCCGCTTCATTGATTAAGTa-aaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG 227 |||| || || ||||||| |||| | |||||| ||| ||||||||||||||| ||| Sbjct 1590506 CCAGCTCGGCGTCATTGAATAAGAACAAAAAAAGATGGATGTAGTGGTATTTCACCCGCG 1590565 Query 228 CCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGT 287 ||||| ||| |||||||||||||||| | ||| |||||||| ||| |||||||| Sbjct 1590566 CCGAA---GCTTCCACTTATTCTACACCCTT---GTCTTTTCACAATGTCCAACTAGAGT 1590619 Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGC 329 |||||||||||||||||||||| | |||||||| ||||||| Sbjct 1590620 CAAGCTCAACAGGGTCTTCTTTGCTCGCTGATTTTGCCAAGC 1590661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635199394976