Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2 250 2e-61 seq5 127 2e-24 >seq2 Length=4282893 Score = 250 bits (276), Expect = 2e-61 Identities = 621/932 (67%), Gaps = 18/932 (2%) Strand=Plus/Minus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 || ||||||| || || ||||||||||| || | |||||| || | | ||||||| | Sbjct 3326078 GGGAGGGCAATCGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGCGACGAGTACTCGATA 3326019 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121 || || ||||| || || | ||||| || | | ||| || || |||| Sbjct 3326018 ATCTCAGTGCAGAGGTTGGACGACTTGATGGTACCGAGGTGCTGCTGGTTCGACTTGGAG 3325959 Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181 ||| || |||||||| | |||| | || || ||||| |||| ||| | |||| Sbjct 3325958 TTGGCGGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCGAGGATG 3325899 Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTA-CCTTTGCGTTCGTAATG 66240 ||| ||| || | ||||| | || | | | |||| || || ||||| Sbjct 3325898 GCGAACCAGAGCTTCTGGGCCTTGATGGT-CTTGCGACCCTTGCCAGCACGCTCGTAGCT 3325840 Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACCCCAT--ACTTCGGACAGACATGGACACTTGTGT 66298 ||||||||| || || | | || | || |||| || | || |||| | Sbjct 3325839 CTCGTAGAGGGTCTCAAAC--TCCTCCGAGTGGACGTCGGCGAGGCCGGGGCACTCGGCG 3325782 Query 66299 GGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATC 66358 || ||||| || | ||| ||||| || || ||||| ||| || || || || ||| Sbjct 3325781 GGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCGGGGATC 3325722 Query 66359 CAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG 66418 |||||||||||||| || || || || || |||||| ||||||| || ||||||| | Sbjct 3325721 CAGAGGGCGTAGAACAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGG 3325662 Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478 || ||||| ||||||| ||| || ||||| || || ||||||||||| || | || Sbjct 3325661 TCAAGGAAGTCAAAGACGTCCGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGG 3325602 Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGC---GACATTGTTGAAGACACGCAACATC 66535 || ||| ||||| ||||||||||||||||| | ||| || || | || | ||| Sbjct 3325601 CGCTTGTTACCACCCTGGTCGACGTAGCGAGCGGTGGCATCGT---AGGCGCGGAGCATG 3325545 Query 66536 GGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATA 66595 || |||| ||||| || | || ||||| ||| | ||| || || || || || Sbjct 3325544 GGGACGATACCGTTGGAGTAACCGTTGGTACCGGCAATGTACGAGCCCTTGGCGCGAATG 3325485 Query 66596 TCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGA--TGGCAGCACAATCGGCCA 66653 | ||| | | ||||| ||||| || || ||||| |||| ||| ||| | Sbjct 3325484 TTGTGGATGTGGAGACCGATACCGCCAGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGG 3325425 Query 66654 CTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAA 66713 |||| | | || |||||||||||||| |||| |||| | ||| |||| || | Sbjct 3325424 GTGTC--GTAGATACCGTCAATGGAGTCGTCCTTCATGGCGACAAGGAAGCACGACGACA 3325367 Query 66714 GTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGC 66773 ||||| | || || |||| |||||||||||| | ||||||||||||||| | Sbjct 3325366 TCTGGGGGTGAGGGGTACCGGCGTTGAAGAGGGTGGGCGAGGCGTGCGTAAAGTAACGCT 3325307 Query 66774 GAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTG 66833 |||||| ||||| ||||||| ||| |||||||| || || || || |||| | Sbjct 3325306 CCGACATGAGGTTGTAGGTCTCGAGGACCTTGTCAATGTTGTCACCGTGGATACCGATGG 3325247 Query 66834 C-ACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAG 66892 | ||| ||||| | | || || || || ||| | | | | | ||| | | | | Sbjct 3325246 CGACA-CGCATAATCATGTGCTGGGGACGCTCGGCGACCTTGCCGTCGATGCGGAGGAGG 3325188 Query 66893 TAGGAGCGTTCCAGGGTCTTGATACCAAAGTA 66924 || ||||| || |||||||||| |||||||| Sbjct 3325187 TACGAGCGCTCGAGGGTCTTGAAGCCAAAGTA 3325156 >seq5 Length=2378914 Score = 127 bits (140), Expect = 2e-24 Identities = 406/623 (65%), Gaps = 9/623 (1%) Strand=Plus/Plus Query 61300 TTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATC 61359 || |||||||||||||| |||||||| | ||||| |||| ||| | |||||| Sbjct 2242095 TTTTACGGCTTCCAGATCATGATGGAGAACATTCACTCCGAGACCTACTCGCTCCTCATC 2242154 Query 61360 GATACGTACATCAGGGAGCGGGCGGAACGTGAACGAT-TGTTCAATGCCATCGAGACGAT 61418 || || |||||| | || || || ||| | ||||||| || || || | || Sbjct 2242155 GACACCTACATCCGTGACAACGCCCGCCGC-AACTACCTGTTCAACGCGATTGACAACAT 2242213 Query 61419 ACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTA- 61477 || | ||| ||| || || |||||| || | |||||| | | |||| || Sbjct 2242214 TCCCTGCATCAAGAAGAAGGCCGACTGGGCCCTCCACTGGATCTC--GGACAAGAACTCG 2242271 Query 61478 -CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCG 61536 | |||| || || | | || ||||| | ||||||||| | || ||| || ||| Sbjct 2242272 TCGTTTGCCGAGCGTCTCATCGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGCTCG 2242331 Query 61537 TTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAAT 61596 ||||| | ||||| ||| | ||||| || || || ||||||||||| |||||| ||| Sbjct 2242332 TTTGCGTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAAC 2242391 Query 61597 GAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGC 61656 ||| | || || || |||||||| | || || ||||| | || |||| | | Sbjct 2242392 GAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTGTTCACCCAC 2242451 Query 61657 TATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACT 61716 || | | || || ||| | ||| | || ||||| || | Sbjct 2242452 -CTCCGTCG--CCGCCCCCACCCGGACACCATCAACAGGATCATCCGCGAGGCCGTCGCC 2242508 Query 61717 ATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGA 61776 || || ||||| || || || ||||| | ||||| || ||||| |||||||| Sbjct 2242509 ATTGAGCAGGAGTTCCTCACCGACGCCCTCCCCGTGTCGCTCATTGGCATGAACGCCAAG 2242568 Query 61777 CTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAG 61836 || |||| ||||| ||||| ||||| |||||||||||| | |||| | || | | Sbjct 2242569 CTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTCGTCGCCCTCGGCAACGAC 2242628 Query 61837 CGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAG 61896 | | || | || ||||| || || || ||||| ||||| |||||| | |||||| Sbjct 2242629 AAGCTGTACGACTCGGCCAACCCCTTCGACTTTATGGAGATGATCTCGCTGCAGGGCAAG 2242688 Query 61897 ACGAATTTTTTCGAGAAACGTGT 61919 | || || |||||| ||||| Sbjct 2242689 GCCAACTTCTTCGAGTCGCGTGT 2242711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567820721680