Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq2 80.6 4e-13 >seq2 Length=4354190 Score = 80.6 bits (88), Expect = 4e-13 Identities = 140/202 (69%), Gaps = 7/202 (3%) Strand=Plus/Minus Query 78 ACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCT 137 |||| |||| |||||||| | || | |||||| |||||||||||| | | ||| Sbjct 4334118 ACAATTGGTACACCAGAGAAACGCAGATYCTGGTCCTTTCGTACTAAGGA---CCCATCT 4334062 Query 138 CAAATTTCCTA--CGCCCACGACG--GATAGGGACCGAACTGTCTCGCGACGTTCTGAAC 193 || || ||| || | | | |||||| ||| |||| ||| | ||| ||||| Sbjct 4334061 AAATTTGACTATTCGTTAATGTGGAAGATAGGAACCATACTGACTCACATCGTATTGAAC 4334002 Query 194 CCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCC 253 ||| ||||||| ||| |||||| ||||||||| ||||||| | || | || | Sbjct 4334001 CCAACTCGCGTACCTTTTTAATCTGCGAACAGCAGAACCCTTCCCAGCTTGTACACCAGG 4333942 Query 254 AGGATGAGACGAGCCGACATCG 275 ||||| || ||| |||||||| Sbjct 4333941 AGGATAAGGTGAGTCGACATCG 4333920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780799735260