Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03- 01] 35 sequences; 31,617,680 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1 244 8e-60 seq6 156 3e-33 seq4 96.9 3e-15 >seq1 Length=6947394 Score = 244 bits (270), Expect = 8e-60 Identities = 610/917 (67%), Gaps = 12/917 (1%) Strand=Plus/Plus Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073 || || ||||||||||| || | |||||| |||| | ||||| | || || ||||| Sbjct 1522078 GAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCAATGATCTCAGTGCAG 1522137 Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133 || || | ||||| |||| | ||| || || |||||| ||| || ||| Sbjct 1522138 AGGTTGGACGACTTGATGGTACCCAGGTGCTGCTGGTTCGACTTGCGGTTGGCGGCGTCC 1522197 Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGA 66193 ||||| | |||| | || || ||||| |||| ||||| ||||| | ||| || Sbjct 1522198 TTGTAGAGCATGAAGGGGCCACCAGTCTCTGTCTGGGCCTCAAGGATGGAGAACCAGAGC 1522257 Query 66194 GCGCGTGCCTTCACCGTACGTACCGCCCTA-CCTTTGCGTTCGTAATGTTCGTAGAGGTG 66252 | ||||| | || | | | |||| || | ||| ||||| | |||||||| Sbjct 1522258 TTCTGAGCCTTGATGGT-CTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTAGAGAGC 1522316 Query 66253 TTCGAAGGATTCACCCCAT--ACTTCGGACAGACATGGACACTTGTGTGGACACATCAGC 66310 || || | | || | || || || |||| || |||| | || ||||| || Sbjct 1522317 CTCAAAC--TCCTCCGAGTGGACGTCCGAGAGACCGGGGCACTCGGCAGGGCACATGAGG 1522374 Query 66311 GACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAG 66370 | ||| || ||||| || ||||| ||| || || || || ||||||||||||||| Sbjct 1522375 GTCCAGTCGCCATCGGCCTCGACACGCTTCATGAAGAGGTCGGGGATCCAGAGGGCGTAG 1522434 Query 66371 AAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCA 66430 ||||| || || || || |||||| ||||||| || ||||| | ||||||||| || Sbjct 1522435 AAGAGGTCACGAGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTCG 1522494 Query 66431 AAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCA 66490 |||| |||||| ||||| || || ||||||||||| || | || || ||| ||| Sbjct 1522495 AAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCCT 1522554 Query 66491 CCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTA 66550 || ||||||||||| ||||| | || | | |||| | ||| || || | ||||| Sbjct 1522555 CCCTGGTCGACGTAACGAGCAGTAGCGTCGTATGCACGGAGCATGGGGACAATACCGTTC 1522614 Query 66551 GATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGA 66610 || | || ||||| ||| | ||| || || || || || | ||| | | ||| Sbjct 1522615 GAGTAACCGTTGGTACCGGCAATGTACGAACCCTTGGCACGGATGTTGTGGATGTGGAGA 1522674 Query 66611 CCAATACCACCGGCCGTCTTCGAGA--TGGCAGCACAATCGGCCACTGTCCGGAATATGC 66668 || ||||| ||||| ||||| |||| ||| ||| | |||| | | || | Sbjct 1522675 CCGATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGGGTGTC--GTAGATAC 1522732 Query 66669 CGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTG 66728 |||| || ||||| |||| |||| | ||| |||| || | ||||| ||||| | Sbjct 1522733 CGTCGATCGAGTCCTCCTTCATGGCGACAAGGAAGCACGACGACATCTGGGGGTTGGGGG 1522792 Query 66729 TGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGT 66788 | | || ||||||||| || | ||||| || ||||| | |||||| |||| Sbjct 1522793 TACCAGCGTTGAAGAGGGTAGGCGAGGCGTGGGTGAAGTAGCGCTCCGACATGAGGTTGT 1522852 Query 66789 ACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTG-CACATCGCATCAGG 66847 | ||||| ||||| |||||||| ||||| || || |||| | ||| ||||| | Sbjct 1522853 AAGTCTCAATGACCTTGTCAATGTTGTCGCCGTGGATACCGATCGACAC-GCGCATGATC 1522911 Query 66848 AGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGG 66907 | || || || || ||| | | | | | ||| | | | ||| ||||| || ||| Sbjct 1522912 ATGTGCTGGGGACGCTCGGCGACCTTGCCGTCGATGCGGAGGAGGTACGAGCGCTCAAGG 1522971 Query 66908 GTCTTGATACCAAAGTA 66924 ||||||| |||||||| Sbjct 1522972 GTCTTGAAGCCAAAGTA 1522988 >seq6 Length=1958011 Score = 156 bits (172), Expect = 3e-33 Identities = 402/605 (66%), Gaps = 13/605 (2%) Strand=Plus/Minus Query 61320 CATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA--- 61376 || |||||| |||||||||||| |||| | |||||||| |||||||| | || Sbjct 63687 CAGGGAGAACATCCACTCGGAGACGTACTCACTCCTCATCGACACGTACATTCGCGACAA 63628 Query 61377 -GCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGA 61435 || || | |||| || | ||||| ||||| |||| || ||| | ||| || Sbjct 63627 TGCCCGCCGCACGT--ACC--TCTTCAACGCCATTGAGAACATTCCGTGCATCAAGAAGA 63572 Query 61436 AAGCGGATTGGGCCTTCAATTGGATCACC-AGTACAACGGCTACATTTGGTGAACGATTG 61494 | || || ||||| | |||||| | | | || | || | |||| ||| || || Sbjct 63571 AGGCCGACTGGGCGCTGCGCTGGATCTCGGACGAGAA-GTCTTCGTTTGCTGAGCGTCTG 63513 Query 61495 CTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGG 61554 | || ||||| | |||||||| | || ||| || ||||||||| | ||||| ||| Sbjct 63512 ATTGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCCTCCATCTTCTGG 63453 Query 61555 TTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGAC 61614 | ||||| || || || ||||||||||| |||||| || ||| | || || |||||| Sbjct 63452 CTCAAGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTCGAACGAGCTCATTTCGCGCGAC 63393 Query 61615 GAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCG 61674 ||||| | || || ||||| |||| || |||| | || || ||| Sbjct 63392 GAGGGTCTCCACACCGACTTTGCCTGCCTGCTGTT--TACGC-ACCTCCGCCGCCGCCCG 63336 Query 61675 TCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTG 61734 || | | | ||||| | ||||| || | || || ||||| || || Sbjct 63335 CACCCCGACCTCATCGAGAAGATTATCAAGGAGGCCGTCAAGATTGAGCAGGAGTTCCTC 63276 Query 61735 ACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATT 61794 || || || | |||||||| || || |||||||| ||||| |||| ||||| ||| Sbjct 63275 ACCGAGGCGCTCCCCGTCTCGCTGATTGGCATGAACGCCGGACTCATGTGCCAGTACATT 63216 Query 61795 GAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAA 61854 || ||||| |||||||||||| | |||| | || | || || || | ||| Sbjct 63215 GAGTTTGTCGCCGACCGTCTGCTCGTCGCCCTCGGCAACGAGAAGACGTACTACTCGACC 63156 Query 61855 AACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAA 61914 ||||| || || || ||||| ||||| ||||| | |||||| | || || |||||| Sbjct 63155 AACCCCTTCGACTTTATGGAGATGATCTCGCTCCAGGGCAAGGCCAACTTCTTCGAGTCG 63096 Query 61915 CGTGT 61919 ||||| Sbjct 63095 CGTGT 63091 >seq4 Length=2551142 Score = 96.9 bits (106), Expect = 3e-15 Identities = 185/272 (68%), Gaps = 3/272 (1%) Strand=Plus/Minus Query 61498 GCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTG 61557 || |||||| |||||||| | || ||| || |||||||| || ||||| ||| | Sbjct 1013523 GCGTTTGCGTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCGGCCATCTTCTGGCTC 1013464 Query 61558 AAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAG 61617 ||||| || || || |||| ||| ||||| || ||| ||| | || || ||||||||| Sbjct 1013463 AAGAAGCGCGGGCTCATGCGCGGCCTGACGTTTTCCAACGAGCTCATCTCGCGCGACGAG 1013404 Query 61618 GGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCG 61677 |||||||| || ||||| |||| | | | | || | | || || Sbjct 1013403 GGCATGCACACCGACTTTGCATGCCTGCTGT---ACGGGCACCTCAAGCACCGGTGCCCG 1013347 Query 61678 GAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACT 61737 |||||| ||| |||||||| || ||||| || |||||| |||| || ||||| Sbjct 1013346 CAGGAGCAGGTGCACGAGATTGTGCGCGAGGCCGTCGAAATCGAAAAGGAGTTCCTGACG 1013287 Query 61738 GACGCTTTGCCCGTCTCACTCATCGGCATGAA 61769 ||||| |||| | | || |||||||| || Sbjct 1013286 GACGCGCTGCCATGCGCCCTGATCGGCATCAA 1013255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567830412400