Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apiotrichum_20veenhuisii_20[genbank_20GCA_5F001600595.1_202016-03-
01] 35 sequences; 31,617,680 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq1 244 8e-60
seq6 156 3e-33
seq4 96.9 3e-15
>seq1
Length=6947394
Score = 244 bits (270), Expect = 8e-60
Identities = 610/917 (67%), Gaps = 12/917 (1%)
Strand=Plus/Plus
Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073
|| || ||||||||||| || | |||||| |||| | ||||| | || || |||||
Sbjct 1522078 GAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCAATGATCTCAGTGCAG 1522137
Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133
|| || | ||||| |||| | ||| || || |||||| ||| || |||
Sbjct 1522138 AGGTTGGACGACTTGATGGTACCCAGGTGCTGCTGGTTCGACTTGCGGTTGGCGGCGTCC 1522197
Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGA 66193
||||| | |||| | || || ||||| |||| ||||| ||||| | ||| ||
Sbjct 1522198 TTGTAGAGCATGAAGGGGCCACCAGTCTCTGTCTGGGCCTCAAGGATGGAGAACCAGAGC 1522257
Query 66194 GCGCGTGCCTTCACCGTACGTACCGCCCTA-CCTTTGCGTTCGTAATGTTCGTAGAGGTG 66252
| ||||| | || | | | |||| || | ||| ||||| | ||||||||
Sbjct 1522258 TTCTGAGCCTTGATGGT-CTTGCGACCCTTGCCCTCGCGCTCGTACTTCTCGTAGAGAGC 1522316
Query 66253 TTCGAAGGATTCACCCCAT--ACTTCGGACAGACATGGACACTTGTGTGGACACATCAGC 66310
|| || | | || | || || || |||| || |||| | || ||||| ||
Sbjct 1522317 CTCAAAC--TCCTCCGAGTGGACGTCCGAGAGACCGGGGCACTCGGCAGGGCACATGAGG 1522374
Query 66311 GACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAG 66370
| ||| || ||||| || ||||| ||| || || || || |||||||||||||||
Sbjct 1522375 GTCCAGTCGCCATCGGCCTCGACACGCTTCATGAAGAGGTCGGGGATCCAGAGGGCGTAG 1522434
Query 66371 AAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCA 66430
||||| || || || || |||||| ||||||| || ||||| | ||||||||| ||
Sbjct 1522435 AAGAGGTCACGAGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTCG 1522494
Query 66431 AAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCA 66490
|||| |||||| ||||| || || ||||||||||| || | || || ||| |||
Sbjct 1522495 AAGACGTCGGCGTGCCAAGGCTCAAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCCT 1522554
Query 66491 CCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTA 66550
|| ||||||||||| ||||| | || | | |||| | ||| || || | |||||
Sbjct 1522555 CCCTGGTCGACGTAACGAGCAGTAGCGTCGTATGCACGGAGCATGGGGACAATACCGTTC 1522614
Query 66551 GATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGA 66610
|| | || ||||| ||| | ||| || || || || || | ||| | | |||
Sbjct 1522615 GAGTAACCGTTGGTACCGGCAATGTACGAACCCTTGGCACGGATGTTGTGGATGTGGAGA 1522674
Query 66611 CCAATACCACCGGCCGTCTTCGAGA--TGGCAGCACAATCGGCCACTGTCCGGAATATGC 66668
|| ||||| ||||| ||||| |||| ||| ||| | |||| | | || |
Sbjct 1522675 CCGATACCGCCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGGGTGTC--GTAGATAC 1522732
Query 66669 CGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTG 66728
|||| || ||||| |||| |||| | ||| |||| || | ||||| ||||| |
Sbjct 1522733 CGTCGATCGAGTCCTCCTTCATGGCGACAAGGAAGCACGACGACATCTGGGGGTTGGGGG 1522792
Query 66729 TGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGT 66788
| | || ||||||||| || | ||||| || ||||| | |||||| ||||
Sbjct 1522793 TACCAGCGTTGAAGAGGGTAGGCGAGGCGTGGGTGAAGTAGCGCTCCGACATGAGGTTGT 1522852
Query 66789 ACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTG-CACATCGCATCAGG 66847
| ||||| ||||| |||||||| ||||| || || |||| | ||| ||||| |
Sbjct 1522853 AAGTCTCAATGACCTTGTCAATGTTGTCGCCGTGGATACCGATCGACAC-GCGCATGATC 1522911
Query 66848 AGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGG 66907
| || || || || ||| | | | | | ||| | | | ||| ||||| || |||
Sbjct 1522912 ATGTGCTGGGGACGCTCGGCGACCTTGCCGTCGATGCGGAGGAGGTACGAGCGCTCAAGG 1522971
Query 66908 GTCTTGATACCAAAGTA 66924
||||||| ||||||||
Sbjct 1522972 GTCTTGAAGCCAAAGTA 1522988
>seq6
Length=1958011
Score = 156 bits (172), Expect = 3e-33
Identities = 402/605 (66%), Gaps = 13/605 (2%)
Strand=Plus/Minus
Query 61320 CATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA--- 61376
|| |||||| |||||||||||| |||| | |||||||| |||||||| | ||
Sbjct 63687 CAGGGAGAACATCCACTCGGAGACGTACTCACTCCTCATCGACACGTACATTCGCGACAA 63628
Query 61377 -GCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGA 61435
|| || | |||| || | ||||| ||||| |||| || ||| | ||| ||
Sbjct 63627 TGCCCGCCGCACGT--ACC--TCTTCAACGCCATTGAGAACATTCCGTGCATCAAGAAGA 63572
Query 61436 AAGCGGATTGGGCCTTCAATTGGATCACC-AGTACAACGGCTACATTTGGTGAACGATTG 61494
| || || ||||| | |||||| | | | || | || | |||| ||| || ||
Sbjct 63571 AGGCCGACTGGGCGCTGCGCTGGATCTCGGACGAGAA-GTCTTCGTTTGCTGAGCGTCTG 63513
Query 61495 CTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGG 61554
| || ||||| | |||||||| | || ||| || ||||||||| | ||||| |||
Sbjct 63512 ATTGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCCTCCATCTTCTGG 63453
Query 61555 TTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGAC 61614
| ||||| || || || ||||||||||| |||||| || ||| | || || ||||||
Sbjct 63452 CTCAAGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTCGAACGAGCTCATTTCGCGCGAC 63393
Query 61615 GAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCG 61674
||||| | || || ||||| |||| || |||| | || || |||
Sbjct 63392 GAGGGTCTCCACACCGACTTTGCCTGCCTGCTGTT--TACGC-ACCTCCGCCGCCGCCCG 63336
Query 61675 TCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTG 61734
|| | | | ||||| | ||||| || | || || ||||| || ||
Sbjct 63335 CACCCCGACCTCATCGAGAAGATTATCAAGGAGGCCGTCAAGATTGAGCAGGAGTTCCTC 63276
Query 61735 ACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATT 61794
|| || || | |||||||| || || |||||||| ||||| |||| ||||| |||
Sbjct 63275 ACCGAGGCGCTCCCCGTCTCGCTGATTGGCATGAACGCCGGACTCATGTGCCAGTACATT 63216
Query 61795 GAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAA 61854
|| ||||| |||||||||||| | |||| | || | || || || | |||
Sbjct 63215 GAGTTTGTCGCCGACCGTCTGCTCGTCGCCCTCGGCAACGAGAAGACGTACTACTCGACC 63156
Query 61855 AACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAA 61914
||||| || || || ||||| ||||| ||||| | |||||| | || || ||||||
Sbjct 63155 AACCCCTTCGACTTTATGGAGATGATCTCGCTCCAGGGCAAGGCCAACTTCTTCGAGTCG 63096
Query 61915 CGTGT 61919
|||||
Sbjct 63095 CGTGT 63091
>seq4
Length=2551142
Score = 96.9 bits (106), Expect = 3e-15
Identities = 185/272 (68%), Gaps = 3/272 (1%)
Strand=Plus/Minus
Query 61498 GCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTG 61557
|| |||||| |||||||| | || ||| || |||||||| || ||||| ||| |
Sbjct 1013523 GCGTTTGCGTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCGGCCATCTTCTGGCTC 1013464
Query 61558 AAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAG 61617
||||| || || || |||| ||| ||||| || ||| ||| | || || |||||||||
Sbjct 1013463 AAGAAGCGCGGGCTCATGCGCGGCCTGACGTTTTCCAACGAGCTCATCTCGCGCGACGAG 1013404
Query 61618 GGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCG 61677
|||||||| || ||||| |||| | | | | || | | || ||
Sbjct 1013403 GGCATGCACACCGACTTTGCATGCCTGCTGT---ACGGGCACCTCAAGCACCGGTGCCCG 1013347
Query 61678 GAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACT 61737
|||||| ||| |||||||| || ||||| || |||||| |||| || |||||
Sbjct 1013346 CAGGAGCAGGTGCACGAGATTGTGCGCGAGGCCGTCGAAATCGAAAAGGAGTTCCTGACG 1013287
Query 61738 GACGCTTTGCCCGTCTCACTCATCGGCATGAA 61769
||||| |||| | | || |||||||| ||
Sbjct 1013286 GACGCGCTGCCATGCGCCCTGATCGGCATCAA 1013255
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397567830412400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |