Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= AAMG01000345.1 Length=193 Score E Sequences producing significant alignments: (Bits) Value seq3514 129 6e-28 seq5806 120 3e-25 >seq3514 Length=3688 Score = 129 bits (142), Expect = 6e-28 Identities = 137/178 (77%), Gaps = 6/178 (3%) Strand=Plus/Minus Query 5 CTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAGATA 64 |||||||||||| ||||||| |||||| ||||||||| | ||||| ||| || | | Sbjct 1875 CTGAAGCTTAGAGGCTTTTCCTGGAAGTATGGCATCAGCAACTTCATCACCTT---GGTG 1819 Query 65 ACTCGTCATCAGCTCCCGGCCTTAGA--ATCCCGGATTTACCTAAGATTCCAGCCTACCA 122 ||||||| || || | |||| | | | |||||||||||||||| | ||||||| Sbjct 1818 ACTCGTC-TCGTGTCTCAGCCTAACAGCAACCCGGATTTACCTAAGTCACTAGCCTACAC 1760 Query 123 CCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCA 180 ||| || ||||| |||| ||||| ||| || |||||| ||||||||| |||||||| Sbjct 1759 ACTTTCACATGGACTACCATCGCCATGCTTGCTTAGCCTGCTCCGTCCCCCCATCGCA 1702 >seq5806 Length=1709 Score = 120 bits (132), Expect = 3e-25 Identities = 145/192 (76%), Gaps = 5/192 (3%) Strand=Plus/Minus Query 5 CTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAGATA 64 |||||||||||| ||||||| ||||||||||||||||| ||||| | | | || Sbjct 735 CTGAAGCTTAGAGGCTTTTCCTGGAAGCATGGCATCAATGACTTCACYACCGTAGT-ATG 677 Query 65 ACTCGTCATCAGCTCCCGGCCTTA-GA-ATCCCGGATTTACCTAAGA-TTCCAGCCTACC 121 |||| | || || | |||||| || | |||||||||||||| || |||||||| Sbjct 676 -CTCGACRTCGTGTCTCAGCCTTAAGAGARACCGGATTTACCTAACTCTTACAGCCTACG 618 Query 122 ACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCAT 181 ||| ||| ||||||||| ||||| || |||||||||||||||||| |||||||| Sbjct 617 CACTTGAACCTGGACAACCGTCGCCAGGCCCACCTAGCCTTCTCCGTCCCCCCATCGCAA 558 Query 182 TAACCAGAAGTA 193 | ||||||| Sbjct 557 TTGTAAGAAGTA 546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518355208782