Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq5806 168 9e-40 seq3514 165 1e-38 seq541 77.0 5e-12 >seq5806 Length=1709 Score = 168 bits (186), Expect = 9e-40 Identities = 190/254 (75%), Gaps = 8/254 (3%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| |||||||||||||||| |||||||| || ||| | | || |||| Sbjct 1002 TTAACCTTCCGGCACCGGGCAGGCGTCACACCGTATACGTCATCTTWCGATTTT-GCACA 944 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||| ||| |||||||| || || || | |||||||| | | |||| | Sbjct 943 GTGCTGTGTTYTTAATAAACAGTTGCAGCCACCTGGTATCTGCGACTSYCRKCWGCTCCA 884 Query 122 -----CACGTCG-TTCACC-AGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTT 174 || ||| |||||| | || || ||||||||||||||||||| ||||||| Sbjct 883 DMGAGCAAGTCTCTTCACCGATCAAGAGCGTACCTTCTCCCGAAGTTACGGTACCATTTT 824 Query 175 GCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGT 234 ||| | |||||| ||| ||||| | | | |||||| |||||||||||| |||||||||| Sbjct 823 GCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCGACCACCTGT 764 Query 235 GTCGGTTTACGGTA 248 |||||||| |||| Sbjct 763 GTCGGTTTGGGGTA 750 >seq3514 Length=3688 Score = 165 bits (182), Expect = 1e-38 Identities = 191/254 (75%), Gaps = 10/254 (4%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||||||||||| |||| |||||||| || ||| | | || |||| Sbjct 2140 TTAACCTTCCGGCACCGGGCAGGTGTCACACCGTATACGTCATCTTGCGATTTT-GCACA 2082 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||| ||||||||| | || || || ||||| | | | ||||| | Sbjct 2081 GTGCTGTGTTTTTAATAAACAGTCCCAGCCACCTGGTCACTGCGGCTCCAATCAGCTTAG 2022 Query 122 ----CACGTCGTTCACCAGCAGTGGCACC---CCTTCTCCCGAAGTTACGGGGCCATTTT 174 || ||| ||| || || | | | | ||||||||||||||||||| | ||||| Sbjct 2021 AGAGCAAGTC--TCATCACCAATCGGAGCGTACCTTCTCCCGAAGTTACGGTACGATTTT 1964 Query 175 GCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGT 234 ||| | |||||| ||| ||||| | | | |||||||||||||||||||||||||||||| Sbjct 1963 GCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTAGTATTCTCTACCTGACCACCTGT 1904 Query 235 GTCGGTTTACGGTA 248 |||||||| |||| Sbjct 1903 GTCGGTTTGGGGTA 1890 >seq541 Length=7200 Score = 77.0 bits (84), Expect = 5e-12 Identities = 73/92 (79%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 157 AAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATT 216 || ||||| || | |||||||| ||||||||| || || | | | |||||||||||| Sbjct 4605 AACTTACGAGGGGAATTTGCCGAGTTCCTTAACAACTTTTAGCTCTA-CGCCTTAGTATT 4547 Query 217 CTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 |||||||| ||||||||||||||| |||| Sbjct 4546 CTCTACCTACGAACCTGTGTCGGTTTAGGGTA 4515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694340001887