Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq5806 150 2e-34 seq3514 145 7e-33 >seq5806 Length=1709 Score = 150 bits (166), Expect = 2e-34 Identities = 99/111 (89%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 48 GTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAA 107 |||| |||||||||| ||||| |||||||||||| ||||||||||| |||||| || | Sbjct 898 GTCGCAGATACCAGGTGGCTGCAACTGTTTATTAARAACACAGCACTGTGCAAAATCGWA 957 Query 108 AGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 158 || |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 958 AGATGACGTATACGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 1008 >seq3514 Length=3688 Score = 145 bits (160), Expect = 7e-33 Identities = 113/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 24 GACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAA 83 ||||||||| |||||| || | || || |||||| |||| |||||||||||||| Sbjct 2012 GACTTGCTCTCTAAGCTGATTGGAGCCGCAGTGACCAGGTGGCTGGGACTGTTTATTAAA 2071 Query 84 AACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCG 143 ||||||||||| |||||| || ||| |||||||| |||||||| |||||||||||||| Sbjct 2072 AACACAGCACTGTGCAAAATCGCAAGATGACGTATACGGTGTGACACCTGCCCGGTGCCG 2131 Query 144 GAAGGTTAATTGATG 158 ||||||||||||||| Sbjct 2132 GAAGGTTAATTGATG 2146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476758803139