Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq5806 201 2e-49 seq3514 170 4e-40 >seq5806 Length=1709 Score = 201 bits (222), Expect = 2e-49 Identities = 182/228 (80%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||| | ||| |||||||||||||||||| ||||| ||||||||||||||| | Sbjct 1373 GGACAGTGTATGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAG 1432 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 | | ||| |||||||||| || |||||| | ||| ||||||| ||| ||||||| Sbjct 1433 CACGAAGGTACCCTCAGCACGGTTGGAAATCGTGCATTGAGTGCAAGAGCATAAGGGTGC 1492 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 |||||||||| || || ||| |||||| |||||||| || || |||||||| ||| Sbjct 1493 TTGACTGCGAGACAGACACGTCGAGCAGGTACGAAAGTAGGTTCTAGTGATCCGGTGGTT 1552 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| |||||| |||| |||||| |||||| |||| ||| | ||||||| Sbjct 1553 CTGTATGGAAGGGCCATCGCTCAACGGAT-AAAGGTACTCCGGGGATA 1599 >seq3514 Length=3688 Score = 170 bits (188), Expect = 4e-40 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 |||||||| | | ||| |||||||||||||||||| ||||||||||||||||||||| | Sbjct 2510 GGACAGTGCCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCCAAAGAGTAACGGAGGAG 2569 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 | | ||| | || || || ||| | | | || |||| || || | ||| | Sbjct 2570 CACGAAGGTTGGCTAAGTACGGTCGGACATCGTACGGTTAGTGTAATGGTAGAAGCCAGC 2629 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 || ||||||| || || ||| |||||| |||||||| || | || |||||||| ||| Sbjct 2630 TTAACTGCGAGACAGACACGTCGAGCAGGTACGAAAGTAGGTCATAGTGATCCGGTGGTT 2689 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||||||| |||| |||||| ||||||||||| ||| | ||||||| Sbjct 2690 CTGAATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCYGGGGATA 2737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982312379744