Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq3514 363 6e-98 >seq3514 Length=3688 Score = 363 bits (402), Expect = 6e-98 Identities = 414/548 (76%), Gaps = 17/548 (3%) Strand=Plus/Minus Query 46 ACTTCCCGGCATTCGGAGTTTGGTTGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCATC 104 |||| ||| |||||||||||| | |||||| | | | |||||||| | Sbjct 1219 ACTTTACGGTATTCGGAGTTTGCAAAGGGTTGGTAAGTCGGGATGACCCCCTAGCCTTAA 1160 Query 105 CAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAA 164 |||||||||||| ||| | | | ||| ||| |||||||| ||||||||||||| Sbjct 1159 CAGTGCTCTACCCCCGTAAGTATTCGTCCGAGGCTCTACCTAAATAGATTTCGGGGAGAA 1100 Query 165 CCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTT 224 ||||||||| | |||||||| ||||||||| |||| |||||||||||||||| | ||| Sbjct 1099 CCAGCTATCTCCCGGTTTGATTAGCCTTTCACTCCTAACCACAGGTCATCCCCTAACTTT 1040 Query 225 TCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGA 284 ||||| | |||||||||||||||||| | | |||| | ||||||||||||||||| Sbjct 1039 TCAACGTTAGTGGGTTCGGTCCTCCAATTGATGTTACTCAATCTTCAACCTGCCCATGGC 980 Query 285 TAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTT 344 |||||||| | ||||||||| | | ||| ||| || ||||| || |||||| ||| Sbjct 979 TAGATCACCGGGTTTCGGGTCTATACCTTGCAACT-ATTCGCCCAGTTAAGACTCGGTTT 921 Query 345 CGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTC 404 | |||||||||||| | | |||||||||||| ||| || || |||| | | |||| Sbjct 920 CCCTACGGCTACCCTA-ATCGGTTAACCTCGCTACA-AAATATAAGTCGCTGACCCATTA 863 Query 405 TTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGG 464 | ||||||| |||| ||||| ||| |||| ||||| || | ||||| | Sbjct 862 TACAAAAGGTACGCAGTCAC-----ACCACGAAGG------TGCTCCTACTGCTTGTACG 814 Query 465 CACATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCAC 523 ||| |||||||||| |||||||||||||| | ||||||| |||||| |||||||||||| Sbjct 813 TACACGGTTTCAGGTTCTATTTCACTCCCCTCACAGGGGTTCTTTTCGCCTTTCCCTCAC 754 Query 524 GGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGC-CAG 582 |||||| || | |||||||||| |||||||||||| ||| || ||||||| | || Sbjct 753 GGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCTCAT 694 Query 583 ATTCACAC 590 ||||| || Sbjct 693 ATTCAGAC 686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817437888256