Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq4000 215 6e-54 seq1155 215 6e-54 seq1793 212 7e-53 >seq4000 Length=10826 Score = 215 bits (238), Expect = 6e-54 Identities = 150/167 (90%), Gaps = 10/167 (6%) Strand=Plus/Plus Query 1 CGTCTCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGT 60 || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 3004 CGACTCTAGAAACCAACAAAATAGAACCGCACGTCCTATTCTATTATTCCATGCTAATGT 3063 Query 61 ATTCGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCC- 119 |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3064 ATTCGGGCATAGGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCC 3123 Query 120 ---TCCGCACACCAATGAAGGCATACG----GGCTCACCAAGAGGTA 159 |||||| |||||||||| ||||| |||||||||||||||| Sbjct 3124 CGACCCGCAC-CCAATGAAGG-ATACGAACCGGCTCACCAAGAGGTA 3168 >seq1155 Length=10417 Score = 215 bits (238), Expect = 6e-54 Identities = 150/167 (90%), Gaps = 10/167 (6%) Strand=Plus/Plus Query 1 CGTCTCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGT 60 || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2871 CGACTCTAGAAACCAACAAAATAGAACCGCACGTCCTATTCTATTATTCCATGCTAATGT 2930 Query 61 ATTCGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCC- 119 |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2931 ATTCGGGCATAGGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCC 2990 Query 120 ---TCCGCACACCAATGAAGGCATACG----GGCTCACCAAGAGGTA 159 |||||| |||||||||| ||||| |||||||||||||||| Sbjct 2991 CGACCCGCAC-CCAATGAAGG-ATACGAACCGGCTCACCAAGAGGTA 3035 >seq1793 Length=6624 Score = 212 bits (234), Expect = 7e-53 Identities = 146/162 (90%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 4 CTCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATT 63 ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 5901 CTCTAGAAACCAACAAAATAGAACCGCATGTCCTATTCTATTATTCCATGCTAATGTATT 5960 Query 64 CGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTC-- 121 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 5961 CGGGCATAGGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCCCGA 6020 Query 122 CGCACA-CCAATGAAGG---CATACGGGCTCACCAAGAGGTA 159 | |||| |||||||||| || || |||||||||||||||| Sbjct 6021 CCCACACCCAATGAAGGATACAAACCGGCTCACCAAGAGGTA 6062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595148573046