Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq3514 217 3e-54 seq5806 214 4e-53 >seq3514 Length=3688 Score = 217 bits (240), Expect = 3e-54 Identities = 298/408 (73%), Gaps = 15/408 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| ||||| |||| | || ||| || Sbjct 1664 CGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTTACCCTACCCTGATTAACATGGGA 1605 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||||| ||||| |||| || |||||| | || |||||||| | Sbjct 1604 TAGGAACCCTTGGTCTTCCGGCGTGCGGGTTTTTCACCCGCATTATCGTTACTCATGTCA 1545 Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGG--CAGCTTCA-CCACTGAC 175 |||||| |||| | || | |||| || || | ||||| || ||||| || || || Sbjct 1544 GCATTCGCACTTCTGAT-ACGTCCAGCATAC---CTCCCGGTACACCTTCAACCGCTTAC 1489 Query 176 ACGACGCTCCCCTACCCAACCACACAGGTTG-----CCACAGCTTCGGCGGATAACTTAA 230 | ||||||||||||| | | | || || ||||||||| | ||| ||| Sbjct 1488 AGAACGCTCCCCTACCACTCAGAATAAATTCTGAATCCGCAGCTTCGGTGCATAGTTTA- 1430 Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290 |||||| ||||| || |||| || ||| ||||||||||||||||||| ||||| || Sbjct 1429 GCCCCGTTACATCTTCCGCGCAGACCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAA 1370 Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350 ||||||||||||| ||||||||||||||| ||||| || |||||||| ||||||||| Sbjct 1369 GGATGGCTGCTTCTAAGCCAACCTCCTGGCTGTCTGGGCCTTTCCACATCGTTTCCCACT 1310 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 | | |||| ||| ||||||||| | |||||| ||||||||||| Sbjct 1309 TAACTATGACTTTGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 1262 >seq5806 Length=1709 Score = 214 bits (236), Expect = 4e-53 Identities = 299/408 (73%), Gaps = 14/408 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| ||||| |||| | | || ||| | Sbjct 521 CGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTYACCCTGCCCCGATTAACGTTGGA 462 Query 61 CTGGAACCCTTGGATAATCGGCG--GACGGGATTCCCACCCGTCACACGCTACTCATGCC 118 | ||||||||||| ||||| || | ||| | ||| | | || |||||||| | Sbjct 461 CAGGAACCCTTGGTCTTCCGGCGAGGAGGTTTTTCACCCCCTTTAT-CGTTACTCATGTC 403 Query 119 TGCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCA-CCACTGACA 176 |||||| |||| | || | |||| || | || ||| || ||||| || || ||| Sbjct 402 AGCATTCGCACTTCTGAT-ACGTCCAGCATGC-GTTACCACACACCTTCAACCGCTTACA 345 Query 177 CGACGCTCCCCTACCCAAC-CACACAGGT----TGCCACAGCTTCGGCGGATAACTTAAG 231 |||||||||||||||| ||| | || |||| ||||||||| | ||||| | Sbjct 344 GAACGCTCCCCTACCCAATGCACTAAAGTGCATTGCCGCAGCTTCGGTTTACTACTTA-G 286 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| ||||| || |||| | ||| ||||||||||||||||||| ||||| || Sbjct 285 CCCCGTTACATCTTCCGCGCAGGCCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAAT 226 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 |||||||||||| |||||||| |||||| ||||| || ||||||| ||||||||| Sbjct 225 GATGGCTGCTTCTAAGCCAACATCCTGGCTGTCTGAGCCTTCCCACATCGTTTCCCACTT 166 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTC 399 ||| | | || ||| ||||||||| | |||||| |||||||||||| Sbjct 165 AGT-AGTAATTTGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCTC 119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177494969856