Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq3514 277 3e-72 seq4002 87.8 3e-15 seq541 87.8 3e-15 seq5806 84.2 3e-14 >seq3514 Length=3688 Score = 277 bits (306), Expect = 3e-72 Identities = 226/275 (82%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 1 CGAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCA 60 ||||| |||||| |||||||||| |||||| |||||| |||| ||| ||||| || Sbjct 3062 CGAGGCCTGCTTCGCGCTTAGATGCTTTCAGCGCTTATCAGTTCCGAACGTAGCTACCGG 3003 Query 61 GCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 || |||| |||||| ||||| | |||||| |||| || || |||||||||||||| Sbjct 3002 GCAATGCCATTGGCATGACAACCCGAACACCAGCGGTTCGTTCACTCCGGTCCTCTCGTA 2943 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||| | || | |||||||| | || ||||||||| | |||||||||||||||||||| Sbjct 2942 CTAGGAGCARCCCCTCTCAATTCTCAAACGCCCACGGCAGATAGGGACCGAACTGTCTCA 2883 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 ||||||||| |||||||||||||| || |||||| ||||||||||| ||||||||||| Sbjct 2882 CGACGTTCTAAACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGAC 2823 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | ||||||||||||||||| || |||||||||||| Sbjct 2822 CGACTTCAGCCCCAGGATGTGATGAGCCGACATCG 2788 >seq4002 Length=7174 Score = 87.8 bits (96), Expect = 3e-15 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||||||| |||| ||| || ||| | |||||| ||||||| || |||||| ||| Sbjct 952 GATAGGGACCATACTGACTCACGTCGTATTAAACCCAACTCGCGTACCCTTTTAATCGGC 893 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||| ||||||| | || |||| || ||||| || ||| |||||||| Sbjct 892 GAACAGCCGAACCCTTCCAAGCTTCTTCCCCCAGAGGATAGGATGAGTCGACATCG 837 >seq541 Length=7200 Score = 87.8 bits (96), Expect = 3e-15 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||||||| |||| ||| || ||| | |||||| ||||||| || |||||| ||| Sbjct 5683 GATAGGGACCATACTGACTCACGTCGTATTAAACCCAACTCGCGTACCCTTTTAATCGGC 5624 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||| ||||||| | || |||| || ||||| || ||| |||||||| Sbjct 5623 GAACAGCCGAACCCTTCCAAGCTTCTTCCCCCAGAGGATAGGATGAGTCGACATCG 5568 >seq5806 Length=1709 Score = 84.2 bits (92), Expect = 3e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 217 GGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||||||||| |||||||||||| ||||||||||||||||| || |||||||||||| Sbjct 1708 GGCGAACAGCCATACCCTTGGGACCGACTTCAGCCCCAGGATGTGATGAGCCGACATCG 1650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780732536684