Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq3514 361 2e-97 seq5806 192 2e-46 >seq3514 Length=3688 Score = 361 bits (400), Expect = 2e-97 Identities = 375/483 (78%), Gaps = 10/483 (2%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| ||| |||||| ||| || ||| ||||||||||||| |||||||| |||| Sbjct 925 CGAGTCTTAACTGGGCGAATAGTTGCAAGGTATAGACCCGAAACCCGGTGATCTAGCCAT 984 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 || |||| ||||| | |||||| |||||| ||||||||||||| |||||||| | Sbjct 985 GGGCAGGTTGAAGATTGAGTAACATCAATTGGAGGACCGAACCCACTAACGTTGAAAAGT 1044 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 |||||||||| |||||| |||| |||||||||||| ||||| ||| ||||||||||||| Sbjct 1045 TAGGGGATGACCTGTGGTTAGGAGTGAAAGGCTAATCAAACCGGGAGATAGCTGGTTCTC 1104 Query 181 TCCGAAAACTATTTAGGTAGTGCCTC--AAGTATCACCATCGGGGGTAGAGCACTGTTAT 238 |||||| |||||||||||| ||||| | | || || ||||||||||||||||||| Sbjct 1105 CCCGAAATCTATTTAGGTAGAGCCTCGGACGAAT-ACTTACGGGGGTAGAGCACTGTTAA 1163 Query 239 GGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTA 298 |||||||||||||| ||||||||||| || ||||||||||||||| | ||| || Sbjct 1164 GGCTAGGGGGTCATCCCGACTTACCAACCCTTTGCAAACTCCGAATACCGTAAAGTAMTA 1223 Query 299 -CCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357 ||| | || | ||| ||||||||| |||||| ||||| || || || ||| Sbjct 1224 TCCGGGAGACACACGGC--GGGTGCTAACGTCCGTCGTGAAGAGGGAAACAACCCAGACC 1281 Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417 ||||||||| ||| || | | || ||||| | ||||| || | || ||||| Sbjct 1282 GCCAGCTAAGGTCCCAAAGTCATAGTTAAGTGGGA--AACGATGTGGAAAGGCCCAGACA 1339 Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 || |||| |||||||| |||||||||| || |||||||| |||||| |||||||| ||| Sbjct 1340 GCCAGGAGGTTGGCTTAGAAGCAGCCA-TCCTTTAAAGAAAGCGTAATAGCTCACTGGTC 1398 Query 478 GAG 480 ||| Sbjct 1399 GAG 1401 >seq5806 Length=1709 Score = 192 bits (212), Expect = 2e-46 Identities = 234/309 (76%), Gaps = 10/309 (3%) Strand=Plus/Plus Query 220 GGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTC 279 |||||||||||||||||| | |||||||||||| ||||||||||| || |||||||||| Sbjct 4 GGGGGTAGAGCACTGTTAAG-CTAGGGGGTCATCCCGACTTACCAACCCTTTGCAAACTC 62 Query 280 CGAATGCGCATCAGTTTTA-CCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGA 338 ||||| | | ||| || ||| | || | ||| ||||||||| |||||| || Sbjct 63 CGAATACCAGTAAGTACTATCCGGGAGACACACGGC--GGGTGCTAACGTCCGTCGTGGA 120 Query 339 GAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACG 398 |||| || || || ||| ||||||||| ||| |||| || |||||| | |||| Sbjct 121 GAGGGAAACAACCCAGACCGCCAGCTAAGGTCCC-AAATTACTACTAAGTGGGA--AACG 177 Query 399 AAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGT 458 | || || ||| ||||||| ||||||||||||| |||||||||| ||||||||||| Sbjct 178 ATGTGGGAAGGCTCAGACAGCCAGGATGTTGGCTTAGAAGCAGCCA-TCATTTAAAGAAA 236 Query 459 GCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAAT-AATCGGGTATTAAGTTGTC 517 |||||| |||||||| |||||| | | ||| ||| || | |||| ||||| || Sbjct 237 GCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGG-GCTAAGTAGTA 295 Query 518 TACCGAAGC 526 |||||||| Sbjct 296 AACCGAAGC 304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689449304576