Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq4000 780 0.0 seq1155 780 0.0 seq3172 235 2e-59 seq7080 208 2e-51 >seq4000 Length=10826 Score = 780 bits (864), Expect = 0.0 Identities = 499/539 (93%), Gaps = 6/539 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 8877 CTTTTGTTCTACACGAGATTTCTGTTCTCGTTGAGTCCCCCTTAGGACACCTGCGTTATC 8936 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 8937 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 8996 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGT-CGGTGAAGACCAGTTCCGCTTCATTG 185 ||||| ||||||||||| |||| || ||| | || || |||| ||||| |||||| Sbjct 8997 AGCCCGTAAAGGACCTTAAAGCCAAAAGGTGGGACTGTTAATCCCAGCTCCGCCTCATTG 9056 Query 186 ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTT 245 | |||||||||| ||||||| ||||||||||||||| |||||||| |||||||||| Sbjct 9057 AATAAGTAAAAAGACGATAAAGGTAGTGGTATTTCAACGGCGCCGAA---GCTCCCACTT 9113 Query 246 ATTCTACA-CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 |||||||| ||||| | ||| |||||||| ||| ||||||||||||||||||||||||| Sbjct 9114 ATTCTACACCCTCT-ATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCT 9172 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 9173 TCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 9232 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9233 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 9292 Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9293 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 9352 Query 485 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 9353 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 9411 >seq1155 Length=10417 Score = 780 bits (864), Expect = 0.0 Identities = 499/539 (93%), Gaps = 6/539 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 8639 CTTTTGTTCTACACGAGATTTCTGTTCTCGTTGAGTCCCCCTTAGGACACCTGCGTTATC 8698 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 8699 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 8758 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGT-CGGTGAAGACCAGTTCCGCTTCATTG 185 ||||| ||||||||||| |||| || ||| | || || |||| ||||| |||||| Sbjct 8759 AGCCCGTAAAGGACCTTAAAGCCAAAAGGTGGGACTGTTAATCCCAGCTCCGCCTCATTG 8818 Query 186 ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTT 245 | |||||||||| ||||||| ||||||||||||||| |||||||| |||||||||| Sbjct 8819 AATAAGTAAAAAGACGATAAAGGTAGTGGTATTTCAACGGCGCCGAA---GCTCCCACTT 8875 Query 246 ATTCTACA-CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 |||||||| ||||| | ||| |||||||| ||| ||||||||||||||||||||||||| Sbjct 8876 ATTCTACACCCTCT-ATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCT 8934 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 8935 TCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 8994 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8995 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 9054 Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9055 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 9114 Query 485 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 9115 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 9173 >seq3172 Length=7909 Score = 235 bits (260), Expect = 2e-59 Identities = 232/295 (79%), Gaps = 6/295 (2%) Strand=Plus/Plus Query 135 AAGGACCTTAACGCCAGAAAATGGT-CGGTGAAGACCAGTTCCGCTTCATTGATTAAGTa 193 ||||||||||| |||| || ||| | | || | || ||| | ||||| | |||||| Sbjct 5106 AAGGACCTTAAAGCCAAAAGGTGGGACTATTAATCCTAGCTCCACCTCATTAAATAAGTA 5165 Query 194 aaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACA 253 |||| || |||| | ||||||||||| | || | ||| |||||||||||||||||| Sbjct 5166 AAAAGACAATAAAGATAGTGGTATTTTAACAGCACTGAA---GCTCCCACTTATTCTACA 5222 Query 254 -CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCC 312 ||||| | || ||| |||| ||| ||||||||||||||||| ||||||||||||||| Sbjct 5223 CCCTCT-ATATCTTTTTACAATGTCAAACTAGAGTCAAGCTCAATAGGGTCTTCTTTCCC 5281 Query 313 CGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACA 372 ||||||| || |||| |||||||| |||||||| |||||||||||||||| | | Sbjct 5282 TACTGATTCTGCTGAGCCTATTCCCTTGCTTGTGGTTTTGCTAGATAGTAGATAGAAATA 5341 Query 373 GTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTT 427 |||| ||||| ||||||||||||| ||||||||||||||||| | | |||| Sbjct 5342 GTGGAAATCTTATTAATCCATTCATATATGTCACTAATTAGATGACAAAGTATTT 5396 Score = 131 bits (144), Expect = 5e-28 Identities = 81/87 (93%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 45 CCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCT 104 ||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||| Sbjct 3158 CCCTTAGGACACCTGTGTTATCTTTTAACAGATGTGCCACCCCAGCCAAACTCCCCACCT 3217 Query 105 GACAATGTCATCAACCCGGATCGGCCC 131 ||||||||| |||||||||||| |||| Sbjct 3218 GACAATGTCTTCAACCCGGATCAGCCC 3244 >seq7080 Length=597 Score = 208 bits (230), Expect = 2e-51 Identities = 135/144 (94%), Gaps = 3/144 (2%) Strand=Plus/Plus Query 238 TCCCACTTATTCTACACCTCTCAA-GTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||| ||| | ||| |||||||| ||| ||||||||||||||||| Sbjct 181 TCCCACTTATTCTACACC-CTCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAA 239 Query 297 -CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 240 ACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 299 Query 356 GATAGTAGATAGGGACAGTGGGAA 379 |||||||||||||||||||||||| Sbjct 300 GATAGTAGATAGGGACAGTGGGAA 323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635054156512