Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq5806 367 4e-99 seq3514 360 7e-97 >seq5806 Length=1709 Score = 367 bits (406), Expect = 4e-99 Identities = 425/565 (75%), Gaps = 12/565 (2%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| ||| ||||||||||||||| ||||| ||| ||| |||||| | |||| || Sbjct 1516 TCGACGTGTCTGTCTCGCAGTCAAGCACCCTTATGCTCTTGCACTCAATGCACGATTTCC 1457 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| |||||||| ||||| | || |||||||||| ||| ||||| | ||||||||| Sbjct 1456 AACCGTGCTGAGGGTACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGA-CCGCCCCAG 1398 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 | ||||||||||||| |||||||| | | || ||| | || || |||||| ||| Sbjct 1397 TCAAACTACCCACCATACACTGTCCTCGATCCGGATRACGGACCTGAGTTAGAACGCCAA 1338 Query 181 TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGT 240 | ||||| ||||||||||| | |||||| | || ||| | | ||| || Sbjct 1337 TGATGTCAGGCTGGTATTTCAAGGTTGGCTCCACCGCATCTGGCGACGTGGTTTCAAAGC 1278 Query 241 CTCCCACCTATCCTACACAAACCGCACC-GAATGCCAATACCAAGCTATAGTGAAGGTCC 299 |||||| |||||||||||| || || | | || ||| | |||||||||| ||||| | Sbjct 1277 CTCCCAGCTATCCTACACAGACAACATCAGCAT-CCAGTGTAAAGCTATAGTAAAGGTTC 1219 Query 300 -CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACC 358 |||||||||| |||| |||||| | | |||||||| ||| | | ||||||||| Sbjct 1218 ACGGGGTCTTTCCGTCTAGCCGCGGGTACACAGCATCTTCACTGCGATTTCAATTTCACT 1159 Query 359 GGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACC 418 | | || ||| |||||||| || || |||||||||||||||||||||||||||||| Sbjct 1158 GAGTCTCGGGTGGAGACAGCGTGGCCATCATTACGCCATTCGTGCAGGTCGGAACTTACC 1099 Query 419 CGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTT 478 |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| Sbjct 1098 CGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTT 1039 Query 479 CAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACC 538 | || | || || || | | || || || | |||||||||| ||||| Sbjct 1038 CGATCAAGAGCTTC-GAC-CGAAGT------CTAACCCCATCAATTAACCTTCCGGCACC 987 Query 539 GGGCAGGCGTCAGTCCGTATACCTC 563 |||||||||||| |||||||| || Sbjct 986 GGGCAGGCGTCACACCGTATACGTC 962 >seq3514 Length=3688 Score = 360 bits (398), Expect = 7e-97 Identities = 427/569 (75%), Gaps = 21/569 (4%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| ||| |||||||||| ||||| ||| | | ||||||| ||| ||| || Sbjct 2653 TCGACGTGTCTGTCTCGCAGTTAAGCTGGCTTCTACCATTACACTAACCGTACGATGTCC 2594 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||| || || |||||| | || |||||||||| ||||||||| | ||||||||| Sbjct 2593 GACCGTACTTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTGGGAGGAGA-CCGCCCCAG 2535 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGAT-CATGGGCCAAGGTTAGAT-ATCC 178 | ||||||||||||||||||||||| ||||| ||| || ||||||| |||||| ||| Sbjct 2534 TCAAACTACCCACCAGGCACTGTCCGTAACCCCGATTCAGGGGCCAACGTTAGAACATCA 2475 Query 179 A--CTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCA 236 | |||| || |||||||||||| ||||||||| | |||||||| | | ||| Sbjct 2474 AAACTACA---AGGGTGGTATTTCAAGGACGACTCCAACAAAACTAGCGTCTCATCTTCA 2418 Query 237 TAGTCTCCCACCTATCCTACACAAACCGCACCGAATGC-CAATACCAAGCTATAGTGAAG 295 |||||||||||||||||||||| | | |||| || | ||||||| |||| ||| Sbjct 2417 AAGTCTCCCACCTATCCTACACATGTAGGTTC-AATGTTCAGTGCCAAGCTGTAGTAAAG 2359 Query 296 GTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTT 354 || | |||||||||| |||| |||||| | | |||||||| ||| | | |||||| Sbjct 2358 GTTCACGGGGTCTTTCCGTCTAGCCGCGGGTACACAGCATCTTCACTGCGATTTCAATTT 2299 Query 355 CACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACT 414 ||| | | || ||| |||||||| || | ||||| ||||||||||||||||||||| Sbjct 2298 CACTGAGTCTCGGGTGGAGACAGCGTGGCCATGGTTACACCATTCGTGCAGGTCGGAACT 2239 Query 415 TACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGG 474 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||| Sbjct 2238 TACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGG 2179 Query 475 GCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAG 534 ||||| || | || || | || | | || | |||||||||| | Sbjct 2178 GCTTCGATCAAGAGCTTCTC------CG----AAGATAACCCCATCAATTAACCTTCCGG 2129 Query 535 CACCGGGCAGGCGTCAGTCCGTATACCTC 563 ||||||||||| |||| |||||||| || Sbjct 2128 CACCGGGCAGGTGTCACACCGTATACGTC 2100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702248162944