Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athelia_20rolfsii_20[genbank_20GCA_5F000961905.2_202017-07-24] 8,919 sequences; 72,332,728 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq4000 728 0.0 seq1155 728 0.0 seq1791 129 2e-27 seq1793 89.7 2e-15 >seq4000 Length=10826 Score = 728 bits (806), Expect = 0.0 Identities = 470/508 (93%), Gaps = 5/508 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||| Sbjct 3341 GTACTCATTCCAATTATAAGACCCAAAAGAGCCCTATATTGTTATTTATTGTCACTACCT 3400 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3401 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 3460 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 3461 TCTCAGGCTCCCTCTCCGGAATCGAACCCTTATTCCCCGTTACCCGTTGAAACCATGGTA 3520 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||||||||||||||||| |||||| ||||||||||| ||||| |||| Sbjct 3521 GGCCTCTATCCTACCATCGAAAGTTGATA-GGCAGATATTTGAATGAAGCATCGTCGGCA 3579 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAA-GGAGCCCCGAAGGGCGTTGG 299 ||||||||| ||||||| |||||||||||||||||||| ||||| | | ||||||| Sbjct 3580 CAAGGCCATACGATTCGAGAAGTTATTATGAATCACCAAGGGAGCGGCAAGCCGCGTTGG 3639 Query 300 TTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGG-TTTTTAGCATGTATTAGCTC 357 |||||||||||||||||||||||||||| ||||| |||| || | |||||||||||||| Sbjct 3640 TTTTTTATCTAATAAATACACCCCTTCCAGAAGTTGGGGCTTAATTGCATGTATTAGCTC 3699 Query 358 TAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAA 417 |||||||||||| |||||||||||||||||| || ||||||||||| ||||||||||||| Sbjct 3700 TAGAATTACCACAGTTATCCATGTAGTAAGGAACCATCAAATAAACTATAACTGATTTAA 3759 Query 418 TGAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCATGGCTTAATC 476 |||||||||||||||||||| ||| | | ||| ||||||||||||||||||||||||||| Sbjct 3760 TGAGCCATTCGCAGTTTCACAGTACAAACTTGTTTATACTTAGACATGCATGGCTTAATC 3819 Query 477 TTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||| Sbjct 3820 TTTGAGACAAGCATATGACTACTGGCAG 3847 >seq1155 Length=10417 Score = 728 bits (806), Expect = 0.0 Identities = 470/508 (93%), Gaps = 5/508 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||| Sbjct 3208 GTACTCATTCCAATTATAAGACCCAAAAGAGCCCTATATTGTTATTTATTGTCACTACCT 3267 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3268 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 3327 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 3328 TCTCAGGCTCCCTCTCCGGAATCGAACCCTTATTCCCCGTTACCCGTTGAAACCATGGTA 3387 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||||||||||||||||| |||||| ||||||||||| ||||| |||| Sbjct 3388 GGCCTCTATCCTACCATCGAAAGTTGATA-GGCAGATATTTGAATGAAGCATCGTCGGCA 3446 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAA-GGAGCCCCGAAGGGCGTTGG 299 ||||||||| ||||||| |||||||||||||||||||| ||||| | | ||||||| Sbjct 3447 CAAGGCCATACGATTCGAGAAGTTATTATGAATCACCAAGGGAGCGGCAAGCCGCGTTGG 3506 Query 300 TTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGG-TTTTTAGCATGTATTAGCTC 357 |||||||||||||||||||||||||||| ||||| |||| || | |||||||||||||| Sbjct 3507 TTTTTTATCTAATAAATACACCCCTTCCAGAAGTTGGGGCTTAATTGCATGTATTAGCTC 3566 Query 358 TAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAA 417 |||||||||||| |||||||||||||||||| || ||||||||||| ||||||||||||| Sbjct 3567 TAGAATTACCACAGTTATCCATGTAGTAAGGAACCATCAAATAAACTATAACTGATTTAA 3626 Query 418 TGAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCATGGCTTAATC 476 |||||||||||||||||||| ||| | | ||| ||||||||||||||||||||||||||| Sbjct 3627 TGAGCCATTCGCAGTTTCACAGTACAAACTTGTTTATACTTAGACATGCATGGCTTAATC 3686 Query 477 TTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||| Sbjct 3687 TTTGAGACAAGCATATGACTACTGGCAG 3714 >seq1791 Length=22751 Score = 129 bits (142), Expect = 2e-27 Identities = 108/130 (83%), Gaps = 7/130 (5%) Strand=Plus/Minus Query 318 CACCCCTTCC-GAAGTCGGGGTTTT-TAGCATGTATTAGCTCTAGAATTACCACGGTTAT 375 |||||||||| ||||| |||| || | |||||||||||||||||||||||||| ||||| Sbjct 22751 CACCCCTTCCAGAAGTTGGGGCTTAATTGCATGTATTAGCTCTAGAATTACCACAGTTAT 22692 Query 376 CCATGTAGTAAGGTACTATCAAATAAACGATAACTGA---TTTAATG-AG-CCATTCGCA 430 ||||||||||||| || ||||||||||| |||||||| |||||| | |||| | | Sbjct 22691 CCATGTAGTAAGGAACCATCAAATAAACTATAACTGACTTCTTAATGTAKACCATKSGYA 22632 Query 431 GTTTCACTGT 440 |||||| || Sbjct 22631 KTTTCACAGT 22622 >seq1793 Length=6624 Score = 89.7 bits (98), Expect = 2e-15 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 ||||||||||||||| |||||||||||||||||| ||| |||||||| | |||||||| Sbjct 6236 TACTCATTCCAATTATAAGACCCAAAAGAGCCCTATATTGTTATTTATTATTACTACCTC 6295 Query 62 CCCGTGT 68 ||||||| Sbjct 6296 CCCGTGT 6302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510265287424