Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq252 149 3e-34 seq206 149 3e-34 seq118 149 3e-34 seq51 149 3e-34 >seq252 Length=544549 Score = 149 bits (164), Expect = 3e-34 Identities = 106/120 (88%), Gaps = 4/120 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATA---ACATCG 57 |||||||||||||||||||||||| |||||||||| ||||||||| ||| | || ||| Sbjct 1178 GAACCCAAAGACTTTGATTTCTCGCAAGGTGCCGATCGAGTCAAA-TGAAATGAACGTCG 1236 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||||||| || |||||||| ||||||||| ||||| ||||| Sbjct 1237 ACCGATCCCTAGTCGGCATAGTTTACTGTGAAGACTACAACGGTATCTAATCGTTTTCGA 1296 Score = 149 bits (164), Expect = 3e-34 Identities = 106/120 (88%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATA---ACATCG 57 |||||||||||||||||||||||| |||||||||| ||||||||| ||| | || ||| Sbjct 52633 GAACCCAAAGACTTTGATTTCTCGCAAGGTGCCGATCGAGTCAAA-TGAAATGAACGTCG 52575 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||||||| || |||||||| ||||||||| ||||| ||||| Sbjct 52574 ACCGATCCCTAGTCGGCATAGTTTACTGTGAAGACTACAACGGTATCTAATCGTTTTCGA 52515 >seq206 Length=298136 Score = 149 bits (164), Expect = 3e-34 Identities = 106/120 (88%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATA---ACATCG 57 |||||||||||||||||||||||| |||||||||| ||||||||| ||| | || ||| Sbjct 61827 GAACCCAAAGACTTTGATTTCTCGCAAGGTGCCGATCGAGTCAAA-TGAAATGAACGTCG 61769 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||||||| || |||||||| ||||||||| ||||| ||||| Sbjct 61768 ACCGATCCCTAGTCGGCATAGTTTACTGTGAAGACTACAACGGTATCTAATCGTTTTCGA 61709 >seq118 Length=767018 Score = 149 bits (164), Expect = 3e-34 Identities = 106/120 (88%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATA---ACATCG 57 |||||||||||||||||||||||| |||||||||| ||||||||| ||| | || ||| Sbjct 649233 GAACCCAAAGACTTTGATTTCTCGCAAGGTGCCGATCGAGTCAAA-TGAAATGAACGTCG 649175 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||||||| || |||||||| ||||||||| ||||| ||||| Sbjct 649174 ACCGATCCCTAGTCGGCATAGTTTACTGTGAAGACTACAACGGTATCTAATCGTTTTCGA 649115 >seq51 Length=1438 Score = 149 bits (164), Expect = 3e-34 Identities = 106/120 (88%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATA---ACATCG 57 |||||||||||||||||||||||| |||||||||| ||||||||| ||| | || ||| Sbjct 613 GAACCCAAAGACTTTGATTTCTCGCAAGGTGCCGATCGAGTCAAA-TGAAATGAACGTCG 555 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||||||| || |||||||| ||||||||| ||||| ||||| Sbjct 554 ACCGATCCCTAGTCGGCATAGTTTACTGTGAAGACTACAACGGTATCTAATCGTTTTCGA 495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278398734150