Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18]
485 sequences; 26,090,089 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq271 378 1e-102
seq252 295 1e-77
seq206 295 1e-77
seq118 295 1e-77
seq51 295 1e-77
>seq271
Length=2488
Score = 378 bits (418), Expect = 1e-102
Identities = 273/313 (87%), Gaps = 2/313 (1%)
Strand=Plus/Plus
Query 7 GTCCGGCCGGGCCTTTCCTTCTGGGGATC-CGCATGCCCTTCACTGGGTGTGCCGGGGAG 65
||| | ||| | ||||||| |||| || | || ||| | || | | | ||||| ||||
Sbjct 91 GTCTGACCGAGTCTTTCCTCCTGGTGAGCTCGTATGGCATTTATTTGTTGTGCGAGGGAA 150
Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATT 125
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 151 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTATGCCCGAATACATT 210
Query 126 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTA 185
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 211 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGATCGCCGTA 270
Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245
||||||||||||||| || ||||| | ||||||| ||| ||||||||||||||||||
Sbjct 271 ATGATTAATAGGGATGGTTGGGGGCATTAGTATTCCGTTGCTAGAGGTGAAATTCTTGGA 330
Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305
|||| ||||||||||| |||||||||| || ||||||| |||||||||||||| |||
Sbjct 331 TTTACGGAAGACTAACTTCTGCGAAAGCATTTGCCAAGGACGTTTTCATTAATCA-AGAA 389
Query 306 CGAAAGTTAGGGG 318
|||| ||||||||
Sbjct 390 CGAAGGTTAGGGG 402
>seq252
Length=544549
Score = 295 bits (326), Expect = 1e-77
Identities = 225/261 (86%), Gaps = 5/261 (2%)
Strand=Plus/Minus
Query 62 GGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGA 118
||| ||| || || |||| ||||||||||||||||||||||||||||| | ||| ||
Sbjct 1557 GGAACCATGAACTGTTACCTTGAAAAAATTAGAGTGTTCAAAGCAGGCTATGATGCCGGA 1498
Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA- 177
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1497 ATACATTAGCATGGAATAATGAAATAGGACGTGCGGACCTATTTTGTTGGTTTCTAGGAG 1438
Query 178 CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAA 237
||||||||||||||||||||||||| |||||| | ||||||||| | || |||||||
Sbjct 1437 CCGCCGTAATGATTAATAGGGATAGCCGGGGGCATTTGTATTCAATGGCAAGGGGTGAAA 1378
Query 238 TTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAA 297
| |||||||| ||||||||| |||| |||||||||| || |||||||||||||||||||
Sbjct 1377 TCCTTGGATTCATTGAAGACAAACTTCTGCGAAAGCATTTGCCAAGGATGTTTTCATTAA 1318
Query 298 TCAGTGAACGAAAGTTAGGGG 318
||| ||||||| || |||||
Sbjct 1317 TCA-AGAACGAAGGTGAGGGG 1298
Score = 295 bits (326), Expect = 1e-77
Identities = 225/261 (86%), Gaps = 5/261 (2%)
Strand=Plus/Plus
Query 62 GGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGA 118
||| ||| || || |||| ||||||||||||||||||||||||||||| | ||| ||
Sbjct 52254 GGAACCATGAACTGTTACCTTGAAAAAATTAGAGTGTTCAAAGCAGGCTATGATGCCGGA 52313
Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA- 177
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 52314 ATACATTAGCATGGAATAATGAAATAGGACGTGCGGACCTATTTTGTTGGTTTCTAGGAG 52373
Query 178 CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAA 237
||||||||||||||||||||||||| |||||| | ||||||||| | || |||||||
Sbjct 52374 CCGCCGTAATGATTAATAGGGATAGCCGGGGGCATTTGTATTCAATGGCAAGGGGTGAAA 52433
Query 238 TTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAA 297
| |||||||| ||||||||| |||| |||||||||| || |||||||||||||||||||
Sbjct 52434 TCCTTGGATTCATTGAAGACAAACTTCTGCGAAAGCATTTGCCAAGGATGTTTTCATTAA 52493
Query 298 TCAGTGAACGAAAGTTAGGGG 318
||| ||||||| || |||||
Sbjct 52494 TCA-AGAACGAAGGTGAGGGG 52513
>seq206
Length=298136
Score = 295 bits (326), Expect = 1e-77
Identities = 225/261 (86%), Gaps = 5/261 (2%)
Strand=Plus/Plus
Query 62 GGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGA 118
||| ||| || || |||| ||||||||||||||||||||||||||||| | ||| ||
Sbjct 61448 GGAACCATGAACTGTTACCTTGAAAAAATTAGAGTGTTCAAAGCAGGCTATGATGCCGGA 61507
Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA- 177
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 61508 ATACATTAGCATGGAATAATGAAATAGGACGTGCGGACCTATTTTGTTGGTTTCTAGGAG 61567
Query 178 CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAA 237
||||||||||||||||||||||||| |||||| | ||||||||| | || |||||||
Sbjct 61568 CCGCCGTAATGATTAATAGGGATAGCCGGGGGCATTTGTATTCAATGGCAAGGGGTGAAA 61627
Query 238 TTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAA 297
| |||||||| ||||||||| |||| |||||||||| || |||||||||||||||||||
Sbjct 61628 TCCTTGGATTCATTGAAGACAAACTTCTGCGAAAGCATTTGCCAAGGATGTTTTCATTAA 61687
Query 298 TCAGTGAACGAAAGTTAGGGG 318
||| ||||||| || |||||
Sbjct 61688 TCA-AGAACGAAGGTGAGGGG 61707
>seq118
Length=767018
Score = 295 bits (326), Expect = 1e-77
Identities = 225/261 (86%), Gaps = 5/261 (2%)
Strand=Plus/Plus
Query 62 GGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGA 118
||| ||| || || |||| ||||||||||||||||||||||||||||| | ||| ||
Sbjct 648854 GGAACCATGAACTGTTACCTTGAAAAAATTAGAGTGTTCAAAGCAGGCTATGATGCCGGA 648913
Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA- 177
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 648914 ATACATTAGCATGGAATAATGAAATAGGACGTGCGGACCTATTTTGTTGGTTTCTAGGAG 648973
Query 178 CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAA 237
||||||||||||||||||||||||| |||||| | ||||||||| | || |||||||
Sbjct 648974 CCGCCGTAATGATTAATAGGGATAGCCGGGGGCATTTGTATTCAATGGCAAGGGGTGAAA 649033
Query 238 TTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAA 297
| |||||||| ||||||||| |||| |||||||||| || |||||||||||||||||||
Sbjct 649034 TCCTTGGATTCATTGAAGACAAACTTCTGCGAAAGCATTTGCCAAGGATGTTTTCATTAA 649093
Query 298 TCAGTGAACGAAAGTTAGGGG 318
||| ||||||| || |||||
Sbjct 649094 TCA-AGAACGAAGGTGAGGGG 649113
>seq51
Length=1438
Score = 295 bits (326), Expect = 1e-77
Identities = 225/261 (86%), Gaps = 5/261 (2%)
Strand=Plus/Plus
Query 62 GGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGA 118
||| ||| || || |||| ||||||||||||||||||||||||||||| | ||| ||
Sbjct 234 GGAACCATGAACTGTTACCTTGAAAAAATTAGAGTGTTCAAAGCAGGCTATGATGCCGGA 293
Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA- 177
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 294 ATACATTAGCATGGAATAATGAAATAGGACGTGCGGACCTATTTTGTTGGTTTCTAGGAG 353
Query 178 CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAA 237
||||||||||||||||||||||||| |||||| | ||||||||| | || |||||||
Sbjct 354 CCGCCGTAATGATTAATAGGGATAGCCGGGGGCATTTGTATTCAATGGCAAGGGGTGAAA 413
Query 238 TTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAA 297
| |||||||| ||||||||| |||| |||||||||| || |||||||||||||||||||
Sbjct 414 TCCTTGGATTCATTGAAGACAAACTTCTGCGAAAGCATTTGCCAAGGATGTTTTCATTAA 473
Query 298 TCAGTGAACGAAAGTTAGGGG 318
||| ||||||| || |||||
Sbjct 474 TCA-AGAACGAAGGTGAGGGG 493
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915195561280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |