Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq271 378 1e-102 seq252 295 1e-77 seq206 295 1e-77 seq118 295 1e-77 seq51 295 1e-77 >seq271 Length=2488 Score = 378 bits (418), Expect = 1e-102 Identities = 273/313 (87%), Gaps = 2/313 (1%) Strand=Plus/Plus Query 7 GTCCGGCCGGGCCTTTCCTTCTGGGGATC-CGCATGCCCTTCACTGGGTGTGCCGGGGAG 65 ||| | ||| | ||||||| |||| || | || ||| | || | | | ||||| |||| Sbjct 91 GTCTGACCGAGTCTTTCCTCCTGGTGAGCTCGTATGGCATTTATTTGTTGTGCGAGGGAA 150 Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATT 125 ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 151 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTATGCCCGAATACATT 210 Query 126 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTA 185 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 211 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGATCGCCGTA 270 Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 ||||||||||||||| || ||||| | ||||||| ||| |||||||||||||||||| Sbjct 271 ATGATTAATAGGGATGGTTGGGGGCATTAGTATTCCGTTGCTAGAGGTGAAATTCTTGGA 330 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 |||| ||||||||||| |||||||||| || ||||||| |||||||||||||| ||| Sbjct 331 TTTACGGAAGACTAACTTCTGCGAAAGCATTTGCCAAGGACGTTTTCATTAATCA-AGAA 389 Query 306 CGAAAGTTAGGGG 318 |||| |||||||| Sbjct 390 CGAAGGTTAGGGG 402 >seq252 Length=544549 Score = 295 bits (326), Expect = 1e-77 Identities = 225/261 (86%), Gaps = 5/261 (2%) Strand=Plus/Minus Query 62 GGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGA 118 ||| ||| || || |||| ||||||||||||||||||||||||||||| | ||| || Sbjct 1557 GGAACCATGAACTGTTACCTTGAAAAAATTAGAGTGTTCAAAGCAGGCTATGATGCCGGA 1498 Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA- 177 |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 1497 ATACATTAGCATGGAATAATGAAATAGGACGTGCGGACCTATTTTGTTGGTTTCTAGGAG 1438 Query 178 CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAA 237 ||||||||||||||||||||||||| |||||| | ||||||||| | || ||||||| Sbjct 1437 CCGCCGTAATGATTAATAGGGATAGCCGGGGGCATTTGTATTCAATGGCAAGGGGTGAAA 1378 Query 238 TTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAA 297 | |||||||| ||||||||| |||| |||||||||| || ||||||||||||||||||| Sbjct 1377 TCCTTGGATTCATTGAAGACAAACTTCTGCGAAAGCATTTGCCAAGGATGTTTTCATTAA 1318 Query 298 TCAGTGAACGAAAGTTAGGGG 318 ||| ||||||| || ||||| Sbjct 1317 TCA-AGAACGAAGGTGAGGGG 1298 Score = 295 bits (326), Expect = 1e-77 Identities = 225/261 (86%), Gaps = 5/261 (2%) Strand=Plus/Plus Query 62 GGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGA 118 ||| ||| || || |||| ||||||||||||||||||||||||||||| | ||| || Sbjct 52254 GGAACCATGAACTGTTACCTTGAAAAAATTAGAGTGTTCAAAGCAGGCTATGATGCCGGA 52313 Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA- 177 |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 52314 ATACATTAGCATGGAATAATGAAATAGGACGTGCGGACCTATTTTGTTGGTTTCTAGGAG 52373 Query 178 CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAA 237 ||||||||||||||||||||||||| |||||| | ||||||||| | || ||||||| Sbjct 52374 CCGCCGTAATGATTAATAGGGATAGCCGGGGGCATTTGTATTCAATGGCAAGGGGTGAAA 52433 Query 238 TTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAA 297 | |||||||| ||||||||| |||| |||||||||| || ||||||||||||||||||| Sbjct 52434 TCCTTGGATTCATTGAAGACAAACTTCTGCGAAAGCATTTGCCAAGGATGTTTTCATTAA 52493 Query 298 TCAGTGAACGAAAGTTAGGGG 318 ||| ||||||| || ||||| Sbjct 52494 TCA-AGAACGAAGGTGAGGGG 52513 >seq206 Length=298136 Score = 295 bits (326), Expect = 1e-77 Identities = 225/261 (86%), Gaps = 5/261 (2%) Strand=Plus/Plus Query 62 GGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGA 118 ||| ||| || || |||| ||||||||||||||||||||||||||||| | ||| || Sbjct 61448 GGAACCATGAACTGTTACCTTGAAAAAATTAGAGTGTTCAAAGCAGGCTATGATGCCGGA 61507 Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA- 177 |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 61508 ATACATTAGCATGGAATAATGAAATAGGACGTGCGGACCTATTTTGTTGGTTTCTAGGAG 61567 Query 178 CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAA 237 ||||||||||||||||||||||||| |||||| | ||||||||| | || ||||||| Sbjct 61568 CCGCCGTAATGATTAATAGGGATAGCCGGGGGCATTTGTATTCAATGGCAAGGGGTGAAA 61627 Query 238 TTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAA 297 | |||||||| ||||||||| |||| |||||||||| || ||||||||||||||||||| Sbjct 61628 TCCTTGGATTCATTGAAGACAAACTTCTGCGAAAGCATTTGCCAAGGATGTTTTCATTAA 61687 Query 298 TCAGTGAACGAAAGTTAGGGG 318 ||| ||||||| || ||||| Sbjct 61688 TCA-AGAACGAAGGTGAGGGG 61707 >seq118 Length=767018 Score = 295 bits (326), Expect = 1e-77 Identities = 225/261 (86%), Gaps = 5/261 (2%) Strand=Plus/Plus Query 62 GGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGA 118 ||| ||| || || |||| ||||||||||||||||||||||||||||| | ||| || Sbjct 648854 GGAACCATGAACTGTTACCTTGAAAAAATTAGAGTGTTCAAAGCAGGCTATGATGCCGGA 648913 Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA- 177 |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 648914 ATACATTAGCATGGAATAATGAAATAGGACGTGCGGACCTATTTTGTTGGTTTCTAGGAG 648973 Query 178 CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAA 237 ||||||||||||||||||||||||| |||||| | ||||||||| | || ||||||| Sbjct 648974 CCGCCGTAATGATTAATAGGGATAGCCGGGGGCATTTGTATTCAATGGCAAGGGGTGAAA 649033 Query 238 TTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAA 297 | |||||||| ||||||||| |||| |||||||||| || ||||||||||||||||||| Sbjct 649034 TCCTTGGATTCATTGAAGACAAACTTCTGCGAAAGCATTTGCCAAGGATGTTTTCATTAA 649093 Query 298 TCAGTGAACGAAAGTTAGGGG 318 ||| ||||||| || ||||| Sbjct 649094 TCA-AGAACGAAGGTGAGGGG 649113 >seq51 Length=1438 Score = 295 bits (326), Expect = 1e-77 Identities = 225/261 (86%), Gaps = 5/261 (2%) Strand=Plus/Plus Query 62 GGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGA 118 ||| ||| || || |||| ||||||||||||||||||||||||||||| | ||| || Sbjct 234 GGAACCATGAACTGTTACCTTGAAAAAATTAGAGTGTTCAAAGCAGGCTATGATGCCGGA 293 Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA- 177 |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 294 ATACATTAGCATGGAATAATGAAATAGGACGTGCGGACCTATTTTGTTGGTTTCTAGGAG 353 Query 178 CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAA 237 ||||||||||||||||||||||||| |||||| | ||||||||| | || ||||||| Sbjct 354 CCGCCGTAATGATTAATAGGGATAGCCGGGGGCATTTGTATTCAATGGCAAGGGGTGAAA 413 Query 238 TTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAA 297 | |||||||| ||||||||| |||| |||||||||| || ||||||||||||||||||| Sbjct 414 TCCTTGGATTCATTGAAGACAAACTTCTGCGAAAGCATTTGCCAAGGATGTTTTCATTAA 473 Query 298 TCAGTGAACGAAAGTTAGGGG 318 ||| ||||||| || ||||| Sbjct 474 TCA-AGAACGAAGGTGAGGGG 493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915195561280