Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq252 320 3e-85 seq206 320 3e-85 seq118 320 3e-85 seq51 320 3e-85 >seq252 Length=544549 Score = 320 bits (354), Expect = 3e-85 Identities = 225/257 (88%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 794 ACTCGTTGCCTCGGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 853 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||||||||||||| | | |||| ||| | || |||||||||| |||||||||| Sbjct 854 CCTGTTATTGCCTTTATCCTCCAAGCGCTATACGCTTATAGTCCCTCATAGAAGCCAGCG 913 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 || ||||||||| | |||||| | |||||| |||||||||||||||||||||||||| Sbjct 914 GCCGACCATAGTCCACCGGGCTAGTATGCAGGTCAAGGTCTCGTTCGTTATCGGAATTAA 973 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 974 CCTGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCTTGAA 1033 Query 242 AGAGCTATCAATCTGTC 258 |||||| | |||||||| Sbjct 1034 AGAGCTCTTAATCTGTC 1050 Score = 320 bits (354), Expect = 3e-85 Identities = 225/257 (88%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 53017 ACTCGTTGCCTCGGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 52958 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||||||||||||| | | |||| ||| | || |||||||||| |||||||||| Sbjct 52957 CCTGTTATTGCCTTTATCCTCCAAGCGCTATACGCTTATAGTCCCTCATAGAAGCCAGCG 52898 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 || ||||||||| | |||||| | |||||| |||||||||||||||||||||||||| Sbjct 52897 GCCGACCATAGTCCACCGGGCTAGTATGCAGGTCAAGGTCTCGTTCGTTATCGGAATTAA 52838 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 52837 CCTGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCTTGAA 52778 Query 242 AGAGCTATCAATCTGTC 258 |||||| | |||||||| Sbjct 52777 AGAGCTCTTAATCTGTC 52761 >seq206 Length=298136 Score = 320 bits (354), Expect = 3e-85 Identities = 225/257 (88%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 62211 ACTCGTTGCCTCGGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 62152 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||||||||||||| | | |||| ||| | || |||||||||| |||||||||| Sbjct 62151 CCTGTTATTGCCTTTATCCTCCAAGCGCTATACGCTTATAGTCCCTCATAGAAGCCAGCG 62092 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 || ||||||||| | |||||| | |||||| |||||||||||||||||||||||||| Sbjct 62091 GCCGACCATAGTCCACCGGGCTAGTATGCAGGTCAAGGTCTCGTTCGTTATCGGAATTAA 62032 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 62031 CCTGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCTTGAA 61972 Query 242 AGAGCTATCAATCTGTC 258 |||||| | |||||||| Sbjct 61971 AGAGCTCTTAATCTGTC 61955 >seq118 Length=767018 Score = 320 bits (354), Expect = 3e-85 Identities = 225/257 (88%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 649617 ACTCGTTGCCTCGGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 649558 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||||||||||||| | | |||| ||| | || |||||||||| |||||||||| Sbjct 649557 CCTGTTATTGCCTTTATCCTCCAAGCGCTATACGCTTATAGTCCCTCATAGAAGCCAGCG 649498 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 || ||||||||| | |||||| | |||||| |||||||||||||||||||||||||| Sbjct 649497 GCCGACCATAGTCCACCGGGCTAGTATGCAGGTCAAGGTCTCGTTCGTTATCGGAATTAA 649438 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 649437 CCTGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCTTGAA 649378 Query 242 AGAGCTATCAATCTGTC 258 |||||| | |||||||| Sbjct 649377 AGAGCTCTTAATCTGTC 649361 >seq51 Length=1438 Score = 320 bits (354), Expect = 3e-85 Identities = 225/257 (88%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 997 ACTCGTTGCCTCGGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 938 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||||||||||||| | | |||| ||| | || |||||||||| |||||||||| Sbjct 937 CCTGTTATTGCCTTTATCCTCCAAGCGCTATACGCTTATAGTCCCTCATAGAAGCCAGCG 878 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 || ||||||||| | |||||| | |||||| |||||||||||||||||||||||||| Sbjct 877 GCCGACCATAGTCCACCGGGCTAGTATGCAGGTCAAGGTCTCGTTCGTTATCGGAATTAA 818 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 817 CCTGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCTTGAA 758 Query 242 AGAGCTATCAATCTGTC 258 |||||| | |||||||| Sbjct 757 AGAGCTCTTAATCTGTC 741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796796256285