Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18]
485 sequences; 26,090,089 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq252 320 3e-85
seq206 320 3e-85
seq118 320 3e-85
seq51 320 3e-85
>seq252
Length=544549
Score = 320 bits (354), Expect = 3e-85
Identities = 225/257 (88%), Gaps = 0/257 (0%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 ACTCGTTGCCTCGGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 853
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
||||||||||||| | | |||| ||| | || |||||||||| ||||||||||
Sbjct 854 CCTGTTATTGCCTTTATCCTCCAAGCGCTATACGCTTATAGTCCCTCATAGAAGCCAGCG 913
Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181
|| ||||||||| | |||||| | |||||| ||||||||||||||||||||||||||
Sbjct 914 GCCGACCATAGTCCACCGGGCTAGTATGCAGGTCAAGGTCTCGTTCGTTATCGGAATTAA 973
Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 974 CCTGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCTTGAA 1033
Query 242 AGAGCTATCAATCTGTC 258
|||||| | ||||||||
Sbjct 1034 AGAGCTCTTAATCTGTC 1050
Score = 320 bits (354), Expect = 3e-85
Identities = 225/257 (88%), Gaps = 0/257 (0%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 53017 ACTCGTTGCCTCGGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 52958
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
||||||||||||| | | |||| ||| | || |||||||||| ||||||||||
Sbjct 52957 CCTGTTATTGCCTTTATCCTCCAAGCGCTATACGCTTATAGTCCCTCATAGAAGCCAGCG 52898
Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181
|| ||||||||| | |||||| | |||||| ||||||||||||||||||||||||||
Sbjct 52897 GCCGACCATAGTCCACCGGGCTAGTATGCAGGTCAAGGTCTCGTTCGTTATCGGAATTAA 52838
Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 52837 CCTGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCTTGAA 52778
Query 242 AGAGCTATCAATCTGTC 258
|||||| | ||||||||
Sbjct 52777 AGAGCTCTTAATCTGTC 52761
>seq206
Length=298136
Score = 320 bits (354), Expect = 3e-85
Identities = 225/257 (88%), Gaps = 0/257 (0%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62211 ACTCGTTGCCTCGGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 62152
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
||||||||||||| | | |||| ||| | || |||||||||| ||||||||||
Sbjct 62151 CCTGTTATTGCCTTTATCCTCCAAGCGCTATACGCTTATAGTCCCTCATAGAAGCCAGCG 62092
Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181
|| ||||||||| | |||||| | |||||| ||||||||||||||||||||||||||
Sbjct 62091 GCCGACCATAGTCCACCGGGCTAGTATGCAGGTCAAGGTCTCGTTCGTTATCGGAATTAA 62032
Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 62031 CCTGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCTTGAA 61972
Query 242 AGAGCTATCAATCTGTC 258
|||||| | ||||||||
Sbjct 61971 AGAGCTCTTAATCTGTC 61955
>seq118
Length=767018
Score = 320 bits (354), Expect = 3e-85
Identities = 225/257 (88%), Gaps = 0/257 (0%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649617 ACTCGTTGCCTCGGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 649558
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
||||||||||||| | | |||| ||| | || |||||||||| ||||||||||
Sbjct 649557 CCTGTTATTGCCTTTATCCTCCAAGCGCTATACGCTTATAGTCCCTCATAGAAGCCAGCG 649498
Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181
|| ||||||||| | |||||| | |||||| ||||||||||||||||||||||||||
Sbjct 649497 GCCGACCATAGTCCACCGGGCTAGTATGCAGGTCAAGGTCTCGTTCGTTATCGGAATTAA 649438
Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 649437 CCTGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCTTGAA 649378
Query 242 AGAGCTATCAATCTGTC 258
|||||| | ||||||||
Sbjct 649377 AGAGCTCTTAATCTGTC 649361
>seq51
Length=1438
Score = 320 bits (354), Expect = 3e-85
Identities = 225/257 (88%), Gaps = 0/257 (0%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 ACTCGTTGCCTCGGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 938
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
||||||||||||| | | |||| ||| | || |||||||||| ||||||||||
Sbjct 937 CCTGTTATTGCCTTTATCCTCCAAGCGCTATACGCTTATAGTCCCTCATAGAAGCCAGCG 878
Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181
|| ||||||||| | |||||| | |||||| ||||||||||||||||||||||||||
Sbjct 877 GCCGACCATAGTCCACCGGGCTAGTATGCAGGTCAAGGTCTCGTTCGTTATCGGAATTAA 818
Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 817 CCTGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCTTGAA 758
Query 242 AGAGCTATCAATCTGTC 258
|||||| | ||||||||
Sbjct 757 AGAGCTCTTAATCTGTC 741
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796796256285
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |