Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq271 232 8e-59 seq252 147 3e-33 seq206 147 3e-33 seq118 147 3e-33 seq51 147 3e-33 >seq271 Length=2488 Score = 232 bits (256), Expect = 8e-59 Identities = 167/192 (87%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 260 CTAGAAACCAACAAAATAGAACCGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 201 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 ||| || |||||||||||||||||||||||| |||| ||||||||||||||||| |||| Sbjct 200 GGCATAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGGTTCCCTCGCA 141 Query 126 CACCAATGAA--GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 || ||| || | |||||| |||||||| |||| | | || ||| | |||||| |||| Sbjct 140 CAACAAATAAATGCCATACGAGCTCACCAGGAGGAAAGACTCGGTCAGACAGTACACGCC 81 Query 184 GTGAGGCGGACC 195 |||||||||||| Sbjct 80 GTGAGGCGGACC 69 >seq252 Length=544549 Score = 147 bits (162), Expect = 3e-33 Identities = 106/120 (88%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct 1441 CTAGAAACCAACAAAATAGGTCCGCACGTCCTATTTCATTATTCCATGCTAATGTATTCC 1500 Query 66 GGCGT--AAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG-TCCTGGTTCCTCC 122 ||| | ||||||||||||||||||||||||| ||||||||| || || ||||||| || Sbjct 1501 GGCATCATAGCCTGCTTTGAACACTCTAATTTTTTCAAGGTAACAGTTCATGGTTCCACC 1560 Score = 147 bits (162), Expect = 3e-33 Identities = 106/120 (88%), Gaps = 3/120 (3%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct 52370 CTAGAAACCAACAAAATAGGTCCGCACGTCCTATTTCATTATTCCATGCTAATGTATTCC 52311 Query 66 GGCGT--AAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG-TCCTGGTTCCTCC 122 ||| | ||||||||||||||||||||||||| ||||||||| || || ||||||| || Sbjct 52310 GGCATCATAGCCTGCTTTGAACACTCTAATTTTTTCAAGGTAACAGTTCATGGTTCCACC 52251 >seq206 Length=298136 Score = 147 bits (162), Expect = 3e-33 Identities = 106/120 (88%), Gaps = 3/120 (3%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct 61564 CTAGAAACCAACAAAATAGGTCCGCACGTCCTATTTCATTATTCCATGCTAATGTATTCC 61505 Query 66 GGCGT--AAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG-TCCTGGTTCCTCC 122 ||| | ||||||||||||||||||||||||| ||||||||| || || ||||||| || Sbjct 61504 GGCATCATAGCCTGCTTTGAACACTCTAATTTTTTCAAGGTAACAGTTCATGGTTCCACC 61445 >seq118 Length=767018 Score = 147 bits (162), Expect = 3e-33 Identities = 106/120 (88%), Gaps = 3/120 (3%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct 648970 CTAGAAACCAACAAAATAGGTCCGCACGTCCTATTTCATTATTCCATGCTAATGTATTCC 648911 Query 66 GGCGT--AAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG-TCCTGGTTCCTCC 122 ||| | ||||||||||||||||||||||||| ||||||||| || || ||||||| || Sbjct 648910 GGCATCATAGCCTGCTTTGAACACTCTAATTTTTTCAAGGTAACAGTTCATGGTTCCACC 648851 >seq51 Length=1438 Score = 147 bits (162), Expect = 3e-33 Identities = 106/120 (88%), Gaps = 3/120 (3%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct 350 CTAGAAACCAACAAAATAGGTCCGCACGTCCTATTTCATTATTCCATGCTAATGTATTCC 291 Query 66 GGCGT--AAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG-TCCTGGTTCCTCC 122 ||| | ||||||||||||||||||||||||| ||||||||| || || ||||||| || Sbjct 290 GGCATCATAGCCTGCTTTGAACACTCTAATTTTTTCAAGGTAACAGTTCATGGTTCCACC 231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595197203490