Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18]
485 sequences; 26,090,089 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq252 338 1e-90
seq206 338 1e-90
seq118 338 1e-90
seq51 338 1e-90
>seq252
Length=544549
Score = 338 bits (374), Expect = 1e-90
Identities = 264/313 (84%), Gaps = 4/313 (1%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||| |||||| | ||||| || || ||| || ||| ||||||| |
Sbjct 959 GAACGAGACCTTGACCTGCATACTAGCCCGGTGGACTATGGTCGGCCGCTGGCTTCTATG 900
Query 80 AGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138
||||||||| || | ||| |||| | | |||||||||||||||||||||||||||
Sbjct 899 AGGGACTATAAGCGTATAGCGCTTGGAGGATAAAGGCAATAACAGGTCTGTGATGCCCTT 840
Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198
||||||||||||||||||||||||||||||||| ||| |||||||| ||||||| | ||
Sbjct 839 AGATGTTCTGGGCCGCACGCGCGCTACACTGACCGAGGCAACGAGTGTATCACCTGGCCC 780
Query 199 GGAAGG---TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255
| ||| ||||||||||||||| |||||| ||||||||||||||||||||||| ||||
Sbjct 779 GAGAGGGATTCTGGGTAATCTTGTGAAACTCGGTCGTGCTGGGGATAGAGCATTGGAATT 720
Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315
||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||
Sbjct 719 GTTGCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTC 660
Query 316 CCTGCCCTTTGTA 328
|||||||||||||
Sbjct 659 CCTGCCCTTTGTA 647
Score = 338 bits (374), Expect = 1e-90
Identities = 264/313 (84%), Gaps = 4/313 (1%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||| |||||| | ||||| || || ||| || ||| ||||||| |
Sbjct 52852 GAACGAGACCTTGACCTGCATACTAGCCCGGTGGACTATGGTCGGCCGCTGGCTTCTATG 52911
Query 80 AGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138
||||||||| || | ||| |||| | | |||||||||||||||||||||||||||
Sbjct 52912 AGGGACTATAAGCGTATAGCGCTTGGAGGATAAAGGCAATAACAGGTCTGTGATGCCCTT 52971
Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198
||||||||||||||||||||||||||||||||| ||| |||||||| ||||||| | ||
Sbjct 52972 AGATGTTCTGGGCCGCACGCGCGCTACACTGACCGAGGCAACGAGTGTATCACCTGGCCC 53031
Query 199 GGAAGG---TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255
| ||| ||||||||||||||| |||||| ||||||||||||||||||||||| ||||
Sbjct 53032 GAGAGGGATTCTGGGTAATCTTGTGAAACTCGGTCGTGCTGGGGATAGAGCATTGGAATT 53091
Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315
||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||
Sbjct 53092 GTTGCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTC 53151
Query 316 CCTGCCCTTTGTA 328
|||||||||||||
Sbjct 53152 CCTGCCCTTTGTA 53164
>seq206
Length=298136
Score = 338 bits (374), Expect = 1e-90
Identities = 264/313 (84%), Gaps = 4/313 (1%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||| |||||| | ||||| || || ||| || ||| ||||||| |
Sbjct 62046 GAACGAGACCTTGACCTGCATACTAGCCCGGTGGACTATGGTCGGCCGCTGGCTTCTATG 62105
Query 80 AGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138
||||||||| || | ||| |||| | | |||||||||||||||||||||||||||
Sbjct 62106 AGGGACTATAAGCGTATAGCGCTTGGAGGATAAAGGCAATAACAGGTCTGTGATGCCCTT 62165
Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198
||||||||||||||||||||||||||||||||| ||| |||||||| ||||||| | ||
Sbjct 62166 AGATGTTCTGGGCCGCACGCGCGCTACACTGACCGAGGCAACGAGTGTATCACCTGGCCC 62225
Query 199 GGAAGG---TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255
| ||| ||||||||||||||| |||||| ||||||||||||||||||||||| ||||
Sbjct 62226 GAGAGGGATTCTGGGTAATCTTGTGAAACTCGGTCGTGCTGGGGATAGAGCATTGGAATT 62285
Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315
||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||
Sbjct 62286 GTTGCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTC 62345
Query 316 CCTGCCCTTTGTA 328
|||||||||||||
Sbjct 62346 CCTGCCCTTTGTA 62358
>seq118
Length=767018
Score = 338 bits (374), Expect = 1e-90
Identities = 264/313 (84%), Gaps = 4/313 (1%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||| |||||| | ||||| || || ||| || ||| ||||||| |
Sbjct 649452 GAACGAGACCTTGACCTGCATACTAGCCCGGTGGACTATGGTCGGCCGCTGGCTTCTATG 649511
Query 80 AGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138
||||||||| || | ||| |||| | | |||||||||||||||||||||||||||
Sbjct 649512 AGGGACTATAAGCGTATAGCGCTTGGAGGATAAAGGCAATAACAGGTCTGTGATGCCCTT 649571
Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198
||||||||||||||||||||||||||||||||| ||| |||||||| ||||||| | ||
Sbjct 649572 AGATGTTCTGGGCCGCACGCGCGCTACACTGACCGAGGCAACGAGTGTATCACCTGGCCC 649631
Query 199 GGAAGG---TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255
| ||| ||||||||||||||| |||||| ||||||||||||||||||||||| ||||
Sbjct 649632 GAGAGGGATTCTGGGTAATCTTGTGAAACTCGGTCGTGCTGGGGATAGAGCATTGGAATT 649691
Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315
||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||
Sbjct 649692 GTTGCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTC 649751
Query 316 CCTGCCCTTTGTA 328
|||||||||||||
Sbjct 649752 CCTGCCCTTTGTA 649764
>seq51
Length=1438
Score = 338 bits (374), Expect = 1e-90
Identities = 264/313 (84%), Gaps = 4/313 (1%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||| |||||| | ||||| || || ||| || ||| ||||||| |
Sbjct 832 GAACGAGACCTTGACCTGCATACTAGCCCGGTGGACTATGGTCGGCCGCTGGCTTCTATG 891
Query 80 AGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138
||||||||| || | ||| |||| | | |||||||||||||||||||||||||||
Sbjct 892 AGGGACTATAAGCGTATAGCGCTTGGAGGATAAAGGCAATAACAGGTCTGTGATGCCCTT 951
Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198
||||||||||||||||||||||||||||||||| ||| |||||||| ||||||| | ||
Sbjct 952 AGATGTTCTGGGCCGCACGCGCGCTACACTGACCGAGGCAACGAGTGTATCACCTGGCCC 1011
Query 199 GGAAGG---TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255
| ||| ||||||||||||||| |||||| ||||||||||||||||||||||| ||||
Sbjct 1012 GAGAGGGATTCTGGGTAATCTTGTGAAACTCGGTCGTGCTGGGGATAGAGCATTGGAATT 1071
Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315
||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||
Sbjct 1072 GTTGCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTC 1131
Query 316 CCTGCCCTTTGTA 328
|||||||||||||
Sbjct 1132 CCTGCCCTTTGTA 1144
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947195406080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |