Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq252 338 1e-90 seq206 338 1e-90 seq118 338 1e-90 seq51 338 1e-90 >seq252 Length=544549 Score = 338 bits (374), Expect = 1e-90 Identities = 264/313 (84%), Gaps = 4/313 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||| |||||| | ||||| || || ||| || ||| ||||||| | Sbjct 959 GAACGAGACCTTGACCTGCATACTAGCCCGGTGGACTATGGTCGGCCGCTGGCTTCTATG 900 Query 80 AGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 ||||||||| || | ||| |||| | | ||||||||||||||||||||||||||| Sbjct 899 AGGGACTATAAGCGTATAGCGCTTGGAGGATAAAGGCAATAACAGGTCTGTGATGCCCTT 840 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 ||||||||||||||||||||||||||||||||| ||| |||||||| ||||||| | || Sbjct 839 AGATGTTCTGGGCCGCACGCGCGCTACACTGACCGAGGCAACGAGTGTATCACCTGGCCC 780 Query 199 GGAAGG---TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 | ||| ||||||||||||||| |||||| ||||||||||||||||||||||| |||| Sbjct 779 GAGAGGGATTCTGGGTAATCTTGTGAAACTCGGTCGTGCTGGGGATAGAGCATTGGAATT 720 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||| Sbjct 719 GTTGCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTC 660 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 659 CCTGCCCTTTGTA 647 Score = 338 bits (374), Expect = 1e-90 Identities = 264/313 (84%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||| |||||| | ||||| || || ||| || ||| ||||||| | Sbjct 52852 GAACGAGACCTTGACCTGCATACTAGCCCGGTGGACTATGGTCGGCCGCTGGCTTCTATG 52911 Query 80 AGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 ||||||||| || | ||| |||| | | ||||||||||||||||||||||||||| Sbjct 52912 AGGGACTATAAGCGTATAGCGCTTGGAGGATAAAGGCAATAACAGGTCTGTGATGCCCTT 52971 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 ||||||||||||||||||||||||||||||||| ||| |||||||| ||||||| | || Sbjct 52972 AGATGTTCTGGGCCGCACGCGCGCTACACTGACCGAGGCAACGAGTGTATCACCTGGCCC 53031 Query 199 GGAAGG---TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 | ||| ||||||||||||||| |||||| ||||||||||||||||||||||| |||| Sbjct 53032 GAGAGGGATTCTGGGTAATCTTGTGAAACTCGGTCGTGCTGGGGATAGAGCATTGGAATT 53091 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||| Sbjct 53092 GTTGCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTC 53151 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 53152 CCTGCCCTTTGTA 53164 >seq206 Length=298136 Score = 338 bits (374), Expect = 1e-90 Identities = 264/313 (84%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||| |||||| | ||||| || || ||| || ||| ||||||| | Sbjct 62046 GAACGAGACCTTGACCTGCATACTAGCCCGGTGGACTATGGTCGGCCGCTGGCTTCTATG 62105 Query 80 AGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 ||||||||| || | ||| |||| | | ||||||||||||||||||||||||||| Sbjct 62106 AGGGACTATAAGCGTATAGCGCTTGGAGGATAAAGGCAATAACAGGTCTGTGATGCCCTT 62165 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 ||||||||||||||||||||||||||||||||| ||| |||||||| ||||||| | || Sbjct 62166 AGATGTTCTGGGCCGCACGCGCGCTACACTGACCGAGGCAACGAGTGTATCACCTGGCCC 62225 Query 199 GGAAGG---TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 | ||| ||||||||||||||| |||||| ||||||||||||||||||||||| |||| Sbjct 62226 GAGAGGGATTCTGGGTAATCTTGTGAAACTCGGTCGTGCTGGGGATAGAGCATTGGAATT 62285 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||| Sbjct 62286 GTTGCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTC 62345 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 62346 CCTGCCCTTTGTA 62358 >seq118 Length=767018 Score = 338 bits (374), Expect = 1e-90 Identities = 264/313 (84%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||| |||||| | ||||| || || ||| || ||| ||||||| | Sbjct 649452 GAACGAGACCTTGACCTGCATACTAGCCCGGTGGACTATGGTCGGCCGCTGGCTTCTATG 649511 Query 80 AGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 ||||||||| || | ||| |||| | | ||||||||||||||||||||||||||| Sbjct 649512 AGGGACTATAAGCGTATAGCGCTTGGAGGATAAAGGCAATAACAGGTCTGTGATGCCCTT 649571 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 ||||||||||||||||||||||||||||||||| ||| |||||||| ||||||| | || Sbjct 649572 AGATGTTCTGGGCCGCACGCGCGCTACACTGACCGAGGCAACGAGTGTATCACCTGGCCC 649631 Query 199 GGAAGG---TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 | ||| ||||||||||||||| |||||| ||||||||||||||||||||||| |||| Sbjct 649632 GAGAGGGATTCTGGGTAATCTTGTGAAACTCGGTCGTGCTGGGGATAGAGCATTGGAATT 649691 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||| Sbjct 649692 GTTGCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTC 649751 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 649752 CCTGCCCTTTGTA 649764 >seq51 Length=1438 Score = 338 bits (374), Expect = 1e-90 Identities = 264/313 (84%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||| |||||| | ||||| || || ||| || ||| ||||||| | Sbjct 832 GAACGAGACCTTGACCTGCATACTAGCCCGGTGGACTATGGTCGGCCGCTGGCTTCTATG 891 Query 80 AGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 ||||||||| || | ||| |||| | | ||||||||||||||||||||||||||| Sbjct 892 AGGGACTATAAGCGTATAGCGCTTGGAGGATAAAGGCAATAACAGGTCTGTGATGCCCTT 951 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 ||||||||||||||||||||||||||||||||| ||| |||||||| ||||||| | || Sbjct 952 AGATGTTCTGGGCCGCACGCGCGCTACACTGACCGAGGCAACGAGTGTATCACCTGGCCC 1011 Query 199 GGAAGG---TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 | ||| ||||||||||||||| |||||| ||||||||||||||||||||||| |||| Sbjct 1012 GAGAGGGATTCTGGGTAATCTTGTGAAACTCGGTCGTGCTGGGGATAGAGCATTGGAATT 1071 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||| Sbjct 1072 GTTGCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTC 1131 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 1132 CCTGCCCTTTGTA 1144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947195406080