Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18]
485 sequences; 26,090,089 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq252 719 0.0
seq118 719 0.0
seq142 540 3e-151
seq355 190 7e-46
seq268 118 3e-24
>seq252
Length=544549
Score = 719 bits (796), Expect = 0.0
Identities = 484/540 (90%), Gaps = 6/540 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 56546 CTTTTGTTCCACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATT 56487
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| || |||| | ||
Sbjct 56486 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCGACCCAGGTC 56427
Query 127 GGCCCGCGAA---GGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCAT 183
||| ||| || | ||||||| || |||| ||| || | ||| | | |||||||
Sbjct 56426 GGCGCGCAAAACGGCACCTTAATGCTAGAAGCTGGGATGTTACTCCCATTCCTGCTTCAT 56367
Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243
|| ||||| || |||||| | ||||||||||||||||| |||||||| ||||||||
Sbjct 56366 CGAGTAAGTGAAGGAACGATCAAGGTAGTGGTATTTCACTGGCGCCGAA---GCTCCCAC 56310
Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303
|||| ||||||| | | || ||||||| ||| ||||||||||||||||||||||||
Sbjct 56309 TTATCCTACACCCTTAATGTTCCTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTC 56250
Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 56249 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 56190
Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 56189 ATGGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 56130
Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 56129 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGCTTGAATC 56070
Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 56069 TCTTCACATTCACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 56010
>seq118
Length=767018
Score = 719 bits (796), Expect = 0.0
Identities = 484/540 (90%), Gaps = 6/540 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653141 CTTTTGTTCCACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATT 653082
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| || |||| | ||
Sbjct 653081 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCGACCCAGGTC 653022
Query 127 GGCCCGCGAA---GGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCAT 183
||| ||| || | ||||||| || |||| ||| || | ||| | | |||||||
Sbjct 653021 GGCGCGCAAAACGGCACCTTAATGCTAGAAGCTGGGATGTTACTCCCATTCCTGCTTCAT 652962
Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243
|| ||||| || |||||| | ||||||||||||||||| |||||||| ||||||||
Sbjct 652961 CGAGTAAGTGAAGGAACGATCAAGGTAGTGGTATTTCACTGGCGCCGAA---GCTCCCAC 652905
Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303
|||| ||||||| | | || ||||||| ||| ||||||||||||||||||||||||
Sbjct 652904 TTATCCTACACCCTTAATGTTCCTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTC 652845
Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652844 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 652785
Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652784 ATGGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 652725
Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 652724 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGCTTGAATC 652665
Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 652664 TCTTCACATTCACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 652605
Score = 271 bits (300), Expect = 2e-70
Identities = 212/252 (84%), Gaps = 6/252 (2%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700822 CTTTTGTTCCACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATT 700763
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| || |||| | ||
Sbjct 700762 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCGACCCAGGTC 700703
Query 127 GGCCCGCGAA---GGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCAT 183
||| ||| || | ||||||| || |||| ||| || | ||| | | |||||||
Sbjct 700702 GGCGCGCAAAACGGCACCTTAATGCTAGAAGCTGGGATGTTACTCCCATTCCTGCTTCAT 700643
Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243
|| ||||| || |||||| | ||||||||||||||||| |||||||| ||||||||
Sbjct 700642 CGAGTAAGTGAAGGAACGATCAAGGTAGTGGTATTTCACTGGCGCCGAA---GCTCCCAC 700586
Query 244 TTATTCTACACC 255
|||| |||||||
Sbjct 700585 TTATCCTACACC 700574
>seq142
Length=2585
Score = 540 bits (598), Expect = 3e-151
Identities = 363/405 (90%), Gaps = 3/405 (1%)
Strand=Plus/Plus
Query 139 ACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTaaaaaa 198
||||||| || |||| ||| || | ||| | | ||||||| || ||||| || |
Sbjct 3 ACCTTAATGCTAGAAGCTGGGATGTTACTCCCATTCCTGCTTCATCGAGTAAGTGAAGGA 62
Query 199 aCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCT 258
||||| | ||||||||||||||||| |||||||| |||||||||||| ||||||| |
Sbjct 63 ACGATCAAGGTAGTGGTATTTCACTGGCGCCGAA---GCTCCCACTTATCCTACACCCTT 119
Query 259 CAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGA 318
| || ||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 120 AATGTTCCTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGA 179
Query 319 TTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGA 378
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 180 TTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATGGGGACAGTGGGA 239
Query 379 ATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAA 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAA 299
Query 439 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACAT 498
||||||||||||||||||||||||||||||||||||| |||||| ||||||| || ||||
Sbjct 300 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGCTTGAATCTCTTCACATTCACAT 359
Query 499 TCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 360 TCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 404
>seq355
Length=869
Score = 190 bits (210), Expect = 7e-46
Identities = 120/130 (92%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 CTTTTGTTCCACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATT 797
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||||||||||||||||||||||||||||||||| || |||| | ||
Sbjct 798 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCGACCCAGGTC 857
Query 127 GGCCCGCGAA 136
||| ||| ||
Sbjct 858 GGCGCGCAAA 867
>seq268
Length=3406
Score = 118 bits (130), Expect = 3e-24
Identities = 67/68 (99%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3010 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACC 3069
Query 536 ACTTTCTG 543
||||||||
Sbjct 3070 ACTTTCTG 3077
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635192069280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |