Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq252 719 0.0 seq118 719 0.0 seq142 540 3e-151 seq355 190 7e-46 seq268 118 3e-24 >seq252 Length=544549 Score = 719 bits (796), Expect = 0.0 Identities = 484/540 (90%), Gaps = 6/540 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 56546 CTTTTGTTCCACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATT 56487 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| || |||| | || Sbjct 56486 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCGACCCAGGTC 56427 Query 127 GGCCCGCGAA---GGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCAT 183 ||| ||| || | ||||||| || |||| ||| || | ||| | | ||||||| Sbjct 56426 GGCGCGCAAAACGGCACCTTAATGCTAGAAGCTGGGATGTTACTCCCATTCCTGCTTCAT 56367 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 || ||||| || |||||| | ||||||||||||||||| |||||||| |||||||| Sbjct 56366 CGAGTAAGTGAAGGAACGATCAAGGTAGTGGTATTTCACTGGCGCCGAA---GCTCCCAC 56310 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| ||||||| | | || ||||||| ||| |||||||||||||||||||||||| Sbjct 56309 TTATCCTACACCCTTAATGTTCCTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTC 56250 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 56249 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 56190 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 56189 ATGGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 56130 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 56129 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGCTTGAATC 56070 Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 56069 TCTTCACATTCACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 56010 >seq118 Length=767018 Score = 719 bits (796), Expect = 0.0 Identities = 484/540 (90%), Gaps = 6/540 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 653141 CTTTTGTTCCACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATT 653082 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| || |||| | || Sbjct 653081 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCGACCCAGGTC 653022 Query 127 GGCCCGCGAA---GGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCAT 183 ||| ||| || | ||||||| || |||| ||| || | ||| | | ||||||| Sbjct 653021 GGCGCGCAAAACGGCACCTTAATGCTAGAAGCTGGGATGTTACTCCCATTCCTGCTTCAT 652962 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 || ||||| || |||||| | ||||||||||||||||| |||||||| |||||||| Sbjct 652961 CGAGTAAGTGAAGGAACGATCAAGGTAGTGGTATTTCACTGGCGCCGAA---GCTCCCAC 652905 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| ||||||| | | || ||||||| ||| |||||||||||||||||||||||| Sbjct 652904 TTATCCTACACCCTTAATGTTCCTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTC 652845 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 652844 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 652785 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 652784 ATGGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 652725 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 652724 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGCTTGAATC 652665 Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 652664 TCTTCACATTCACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 652605 Score = 271 bits (300), Expect = 2e-70 Identities = 212/252 (84%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 700822 CTTTTGTTCCACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATT 700763 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| || |||| | || Sbjct 700762 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCGACCCAGGTC 700703 Query 127 GGCCCGCGAA---GGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCAT 183 ||| ||| || | ||||||| || |||| ||| || | ||| | | ||||||| Sbjct 700702 GGCGCGCAAAACGGCACCTTAATGCTAGAAGCTGGGATGTTACTCCCATTCCTGCTTCAT 700643 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCAC 243 || ||||| || |||||| | ||||||||||||||||| |||||||| |||||||| Sbjct 700642 CGAGTAAGTGAAGGAACGATCAAGGTAGTGGTATTTCACTGGCGCCGAA---GCTCCCAC 700586 Query 244 TTATTCTACACC 255 |||| ||||||| Sbjct 700585 TTATCCTACACC 700574 >seq142 Length=2585 Score = 540 bits (598), Expect = 3e-151 Identities = 363/405 (90%), Gaps = 3/405 (1%) Strand=Plus/Plus Query 139 ACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTaaaaaa 198 ||||||| || |||| ||| || | ||| | | ||||||| || ||||| || | Sbjct 3 ACCTTAATGCTAGAAGCTGGGATGTTACTCCCATTCCTGCTTCATCGAGTAAGTGAAGGA 62 Query 199 aCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCT 258 ||||| | ||||||||||||||||| |||||||| |||||||||||| ||||||| | Sbjct 63 ACGATCAAGGTAGTGGTATTTCACTGGCGCCGAA---GCTCCCACTTATCCTACACCCTT 119 Query 259 CAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGA 318 | || ||||||| ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 120 AATGTTCCTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGA 179 Query 319 TTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGA 378 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 180 TTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATGGGGACAGTGGGA 239 Query 379 ATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAA 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 ATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAA 299 Query 439 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACAT 498 ||||||||||||||||||||||||||||||||||||| |||||| ||||||| || |||| Sbjct 300 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGCTTGAATCTCTTCACATTCACAT 359 Query 499 TCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 360 TCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 404 >seq355 Length=869 Score = 190 bits (210), Expect = 7e-46 Identities = 120/130 (92%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 738 CTTTTGTTCCACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATT 797 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| || |||| | || Sbjct 798 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCGACCCAGGTC 857 Query 127 GGCCCGCGAA 136 ||| ||| || Sbjct 858 GGCGCGCAAA 867 >seq268 Length=3406 Score = 118 bits (130), Expect = 3e-24 Identities = 67/68 (99%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 3010 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACC 3069 Query 536 ACTTTCTG 543 |||||||| Sbjct 3070 ACTTTCTG 3077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635192069280