Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq355 150 3e-34 seq252 150 3e-34 seq118 150 3e-34 seq268 147 4e-33 >seq355 Length=869 Score = 150 bits (166), Expect = 3e-34 Identities = 213/289 (74%), Gaps = 18/289 (6%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||||| |||||||| ||||| ||||| || | |||| | Sbjct 413 GTACGAGAGGAACCGTCGA-TTCAGG-TAATTGGTATTTGCCTCTGTCCGATCGGGCAAT 356 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| ||||||||| ||||||||||||||||||| |||||||| ||||| Sbjct 355 GGGGCGAAGCTACCACCTGCTGGATAATGGCTGAACGCCTCTAAGCCAGAATCCGTGCCA 296 Query 121 GAACGGGGTGAT-TCTCTCCTGCACATCGTAGTCG-GATACGAATAGG--CTT-CGGCCC 175 ||| | | ||| | ||| |||||| | | | | ||| ||||| ||| || || Sbjct 295 GAA-GCGACGATGTTGGTCCCGCACATGTCACTTGTGTTACACATAGGTCCTTGCGACCG 237 Query 176 CGAACCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCT-----G 230 | ||| || ||| |||| ||| || | |||||| || ||||| | | Sbjct 236 TGCACCGTATATGGCGGGCAGCGGCCGGACGGCGGAA----AGGCCGCTCCGGTTCGTCC 181 Query 231 GCGGATTGCAATTTC-ACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||| || ||||| || | ||| || ||| ||||||||||||||||||| Sbjct 180 GCGTATAGCAATCTCGAATATGGGCGGGGGTAAATCCTTTGCAGACGAC 132 >seq252 Length=544549 Score = 150 bits (166), Expect = 3e-34 Identities = 213/289 (74%), Gaps = 18/289 (6%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||||| |||||||| ||||| ||||| || | |||| | Sbjct 56871 GTACGAGAGGAACCGTCGA-TTCAGG-TAATTGGTATTTGCCTCTGTCCGATCGGGCAAT 56928 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| ||||||||| ||||||||||||||||||| |||||||| ||||| Sbjct 56929 GGGGCGAAGCTACCACCTGCTGGATAATGGCTGAACGCCTCTAAGCCAGAATCCGTGCCA 56988 Query 121 GAACGGGGTGAT-TCTCTCCTGCACATCGTAGTCG-GATACGAATAGG--CTT-CGGCCC 175 ||| | | ||| | ||| |||||| | | | | ||| ||||| ||| || || Sbjct 56989 GAA-GCGACGATGTTGGTCCCGCACATGTCACTTGTGTTACACATAGGTCCTTGCGACCG 57047 Query 176 CGAACCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCT-----G 230 | ||| || ||| |||| ||| || | |||||| || ||||| | | Sbjct 57048 TGCACCGTATATGGCGGGCAGCGGCCGGACGGCGGAA----AGGCCGCTCCGGTTCGTCC 57103 Query 231 GCGGATTGCAATTTC-ACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||| || ||||| || | ||| || ||| ||||||||||||||||||| Sbjct 57104 GCGTATAGCAATCTCGAATATGGGCGGGGGTAAATCCTTTGCAGACGAC 57152 >seq118 Length=767018 Score = 150 bits (166), Expect = 3e-34 Identities = 213/289 (74%), Gaps = 18/289 (6%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||||| |||||||| ||||| ||||| || | |||| | Sbjct 701147 GTACGAGAGGAACCGTCGA-TTCAGG-TAATTGGTATTTGCCTCTGTCCGATCGGGCAAT 701204 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| ||||||||| ||||||||||||||||||| |||||||| ||||| Sbjct 701205 GGGGCGAAGCTACCACCTGCTGGATAATGGCTGAACGCCTCTAAGCCAGAATCCGTGCCA 701264 Query 121 GAACGGGGTGAT-TCTCTCCTGCACATCGTAGTCG-GATACGAATAGG--CTT-CGGCCC 175 ||| | | ||| | ||| |||||| | | | | ||| ||||| ||| || || Sbjct 701265 GAA-GCGACGATGTTGGTCCCGCACATGTCACTTGTGTTACACATAGGTCCTTGCGACCG 701323 Query 176 CGAACCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCT-----G 230 | ||| || ||| |||| ||| || | |||||| || ||||| | | Sbjct 701324 TGCACCGTATATGGCGGGCAGCGGCCGGACGGCGGAA----AGGCCGCTCCGGTTCGTCC 701379 Query 231 GCGGATTGCAATTTC-ACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||| || ||||| || | ||| || ||| ||||||||||||||||||| Sbjct 701380 GCGTATAGCAATCTCGAATATGGGCGGGGGTAAATCCTTTGCAGACGAC 701428 Score = 143 bits (158), Expect = 4e-32 Identities = 213/290 (73%), Gaps = 19/290 (7%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||||| |||||||| ||||| ||||| || | |||| | Sbjct 653466 GTACGAGAGGAACCGTCGA-TTCAGG-TAATTGGTATTTGCCTCTGTCCGATCGGGCAAT 653523 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| ||||||||| ||||||||||||||||||| |||||||| ||||| Sbjct 653524 GGGGCGAAGCTACCACCTGCTGGATAATGGCTGAACGCCTCTAAGCCAGAATCCGTGCCA 653583 Query 121 GAACGGGGTGAT-TCTCTCCTGCACATCGTAGTCG-GATACGAATAGG--CTT-CGGCCC 175 ||| | | ||| | ||| |||||| | | | | ||| ||||| ||| || || Sbjct 653584 GAA-GCGACGATGTTGGTCCCGCACATGTCACTTGTGTTACACATAGGTCCTTGCGACCG 653642 Query 176 CGAACCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCT-----G 230 | ||| || ||| |||| ||| || | |||||| || ||||| | | Sbjct 653643 TGCACCGTATATGGCGGGCAGCGGCCGGACGGCGGAA----AGGCCGCTCCGGTTCGTCC 653698 Query 231 GCGGATTGCAATTTC-ACCATGCGC-AGGGATAAATCCTTTGCAGACGAC 278 ||| || ||||| || | ||| || ||| ||||||||||||||||||| Sbjct 653699 GCGTATAGCAATCTCGAATATGGGCGGGGGGTAAATCCTTTGCAGACGAC 653748 >seq268 Length=3406 Score = 147 bits (162), Expect = 4e-33 Identities = 108/123 (88%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||||| |||||||| |||||| ||||| || | |||| | Sbjct 146 GTACGAGAGGAACCGTTGA-TTCAGA-TAATTGGTATTTGCGACTGTCCGATCGGGCAAT 89 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||| |||||||||||||||||||||||||||||||| |||||||| ||| | Sbjct 88 GTCGCGAAGCTATCATCTGCTGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTA 29 Query 121 GAA 123 ||| Sbjct 28 GAA 26 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819196151040