Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq356 666 0.0 seq252 666 0.0 seq206 666 0.0 seq118 666 0.0 seq181 214 5e-53 >seq356 Length=585 Score = 666 bits (738), Expect = 0.0 Identities = 456/507 (90%), Gaps = 5/507 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||||||| || ||| ||| ||| | || ||| ||||||||||||| Sbjct 532 GTACTCATTCCAATTCCAGAACCTTTAAAAAGCTCCAGATTGTTATGTATTGTCACTACC 473 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 472 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 413 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct 412 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTTATTCCCCGTTACCCGTTGCAACCATGGT 353 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 ||||| ||||||||||||||| ||||||||||||||| ||||||||||| |||||||||| Sbjct 352 AGGCCTCTATCCTACCATCGACAGTTGATAGGGCAGATATTTGAATGAAGCATCGCCGGC 293 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGG 299 ||||||||||||||| | ||||||| |||| ||||||||| | |||||| | ||||| Sbjct 292 GCAAGGCCATGCGATTAGAAAAGTTATCATGATTCACCAAGGGTCGCCGAAGCG-GTTGG 234 Query 300 TTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGG-TTTTTAGCATGTATTAGCTC 357 |||||||||||||||||||||||| || |||||||||| || | |||||||||||||| Sbjct 233 -TTTTTATCTAATAAATACACCCCTCCCAGAAGTCGGGGCTTGATTGCATGTATTAGCTC 175 Query 358 TAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAA 417 |||| ||||||| ||||||||||||| ||| || ||||||||||| ||||||||||||| Sbjct 174 TAGATTTACCACAGTTATCCATGTAGCAAGTCACCATCAAATAAACTATAACTGATTTAA 115 Query 418 TGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCT 477 |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| Sbjct 114 TGAGCCATTCGCAGTTTCACAATATAAGTTGCTTATACTTAGACATGCATGGCTTAATCT 55 Query 478 TTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||| Sbjct 54 TTGAGACAAGCATATGACTACTGGCAG 28 >seq252 Length=544549 Score = 666 bits (738), Expect = 0.0 Identities = 456/507 (90%), Gaps = 5/507 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||||||| || ||| ||| ||| | || ||| ||||||||||||| Sbjct 1776 GTACTCATTCCAATTCCAGAACCTTTAAAAAGCTCCAGATTGTTATGTATTGTCACTACC 1835 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1836 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 1895 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct 1896 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTTATTCCCCGTTACCCGTTGCAACCATGGT 1955 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 ||||| ||||||||||||||| ||||||||||||||| ||||||||||| |||||||||| Sbjct 1956 AGGCCTCTATCCTACCATCGACAGTTGATAGGGCAGATATTTGAATGAAGCATCGCCGGC 2015 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGG 299 ||||||||||||||| | ||||||| |||| ||||||||| | |||||| | ||||| Sbjct 2016 GCAAGGCCATGCGATTAGAAAAGTTATCATGATTCACCAAGGGTCGCCGAAGCG-GTTGG 2074 Query 300 TTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGG-TTTTTAGCATGTATTAGCTC 357 |||||||||||||||||||||||| || |||||||||| || | |||||||||||||| Sbjct 2075 -TTTTTATCTAATAAATACACCCCTCCCAGAAGTCGGGGCTTGATTGCATGTATTAGCTC 2133 Query 358 TAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAA 417 |||| ||||||| ||||||||||||| ||| || ||||||||||| ||||||||||||| Sbjct 2134 TAGATTTACCACAGTTATCCATGTAGCAAGTCACCATCAAATAAACTATAACTGATTTAA 2193 Query 418 TGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCT 477 |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| Sbjct 2194 TGAGCCATTCGCAGTTTCACAATATAAGTTGCTTATACTTAGACATGCATGGCTTAATCT 2253 Query 478 TTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||| Sbjct 2254 TTGAGACAAGCATATGACTACTGGCAG 2280 Score = 666 bits (738), Expect = 0.0 Identities = 456/507 (90%), Gaps = 5/507 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||||||| || ||| ||| ||| | || ||| ||||||||||||| Sbjct 52035 GTACTCATTCCAATTCCAGAACCTTTAAAAAGCTCCAGATTGTTATGTATTGTCACTACC 51976 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51975 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 51916 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct 51915 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTTATTCCCCGTTACCCGTTGCAACCATGGT 51856 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 ||||| ||||||||||||||| ||||||||||||||| ||||||||||| |||||||||| Sbjct 51855 AGGCCTCTATCCTACCATCGACAGTTGATAGGGCAGATATTTGAATGAAGCATCGCCGGC 51796 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGG 299 ||||||||||||||| | ||||||| |||| ||||||||| | |||||| | ||||| Sbjct 51795 GCAAGGCCATGCGATTAGAAAAGTTATCATGATTCACCAAGGGTCGCCGAAGCG-GTTGG 51737 Query 300 TTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGG-TTTTTAGCATGTATTAGCTC 357 |||||||||||||||||||||||| || |||||||||| || | |||||||||||||| Sbjct 51736 -TTTTTATCTAATAAATACACCCCTCCCAGAAGTCGGGGCTTGATTGCATGTATTAGCTC 51678 Query 358 TAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAA 417 |||| ||||||| ||||||||||||| ||| || ||||||||||| ||||||||||||| Sbjct 51677 TAGATTTACCACAGTTATCCATGTAGCAAGTCACCATCAAATAAACTATAACTGATTTAA 51618 Query 418 TGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCT 477 |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| Sbjct 51617 TGAGCCATTCGCAGTTTCACAATATAAGTTGCTTATACTTAGACATGCATGGCTTAATCT 51558 Query 478 TTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||| Sbjct 51557 TTGAGACAAGCATATGACTACTGGCAG 51531 >seq206 Length=298136 Score = 666 bits (738), Expect = 0.0 Identities = 456/507 (90%), Gaps = 5/507 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||||||| || ||| ||| ||| | || ||| ||||||||||||| Sbjct 61229 GTACTCATTCCAATTCCAGAACCTTTAAAAAGCTCCAGATTGTTATGTATTGTCACTACC 61170 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61169 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 61110 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct 61109 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTTATTCCCCGTTACCCGTTGCAACCATGGT 61050 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 ||||| ||||||||||||||| ||||||||||||||| ||||||||||| |||||||||| Sbjct 61049 AGGCCTCTATCCTACCATCGACAGTTGATAGGGCAGATATTTGAATGAAGCATCGCCGGC 60990 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGG 299 ||||||||||||||| | ||||||| |||| ||||||||| | |||||| | ||||| Sbjct 60989 GCAAGGCCATGCGATTAGAAAAGTTATCATGATTCACCAAGGGTCGCCGAAGCG-GTTGG 60931 Query 300 TTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGG-TTTTTAGCATGTATTAGCTC 357 |||||||||||||||||||||||| || |||||||||| || | |||||||||||||| Sbjct 60930 -TTTTTATCTAATAAATACACCCCTCCCAGAAGTCGGGGCTTGATTGCATGTATTAGCTC 60872 Query 358 TAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAA 417 |||| ||||||| ||||||||||||| ||| || ||||||||||| ||||||||||||| Sbjct 60871 TAGATTTACCACAGTTATCCATGTAGCAAGTCACCATCAAATAAACTATAACTGATTTAA 60812 Query 418 TGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCT 477 |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| Sbjct 60811 TGAGCCATTCGCAGTTTCACAATATAAGTTGCTTATACTTAGACATGCATGGCTTAATCT 60752 Query 478 TTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||| Sbjct 60751 TTGAGACAAGCATATGACTACTGGCAG 60725 >seq118 Length=767018 Score = 666 bits (738), Expect = 0.0 Identities = 456/507 (90%), Gaps = 5/507 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||||||| || ||| ||| ||| | || ||| ||||||||||||| Sbjct 648635 GTACTCATTCCAATTCCAGAACCTTTAAAAAGCTCCAGATTGTTATGTATTGTCACTACC 648576 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 648575 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 648516 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct 648515 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTTATTCCCCGTTACCCGTTGCAACCATGGT 648456 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 ||||| ||||||||||||||| ||||||||||||||| ||||||||||| |||||||||| Sbjct 648455 AGGCCTCTATCCTACCATCGACAGTTGATAGGGCAGATATTTGAATGAAGCATCGCCGGC 648396 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGG 299 ||||||||||||||| | ||||||| |||| ||||||||| | |||||| | ||||| Sbjct 648395 GCAAGGCCATGCGATTAGAAAAGTTATCATGATTCACCAAGGGTCGCCGAAGCG-GTTGG 648337 Query 300 TTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGG-TTTTTAGCATGTATTAGCTC 357 |||||||||||||||||||||||| || |||||||||| || | |||||||||||||| Sbjct 648336 -TTTTTATCTAATAAATACACCCCTCCCAGAAGTCGGGGCTTGATTGCATGTATTAGCTC 648278 Query 358 TAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAA 417 |||| ||||||| ||||||||||||| ||| || ||||||||||| ||||||||||||| Sbjct 648277 TAGATTTACCACAGTTATCCATGTAGCAAGTCACCATCAAATAAACTATAACTGATTTAA 648218 Query 418 TGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCT 477 |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| Sbjct 648217 TGAGCCATTCGCAGTTTCACAATATAAGTTGCTTATACTTAGACATGCATGGCTTAATCT 648158 Query 478 TTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||| Sbjct 648157 TTGAGACAAGCATATGACTACTGGCAG 648131 >seq181 Length=534767 Score = 214 bits (236), Expect = 5e-53 Identities = 138/151 (91%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 50 TGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATG 109 ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 38026 TGTCACTACCTCCCCGTGTTGGGATTGGGTAATTTGCGCACCTGCTGCCTTCCTTGGATG 38085 Query 110 TGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTG 169 |||||||||||| ||||||||||||||| | ||| |||| | ||||||| |||||||| | Sbjct 38086 TGGTAGCCGTTTTTCAGGCTCCCTCTCCAGGATCAAACCTTTATTCCCCCTTACCCGTCG 38145 Query 170 ATACCATGGTAGGCCACTATCCTACCATCGA 200 ||||||||||||| ||||||||||||||| Sbjct 38146 CAACCATGGTAGGCCTCTATCCTACCATCGA 38176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510392674560