Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq318 455 3e-123 seq233 194 1e-44 >seq318 Length=903324 Score = 455 bits (504), Expect = 3e-123 Identities = 1228/1858 (66%), Gaps = 44/1858 (2%) Strand=Plus/Minus Query 65080 GACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTCTT 65139 ||| |||||||| || || || || || | | |||| | ||||||||| |||| ||||| Sbjct 25589 GACGGTGAACTGAATGGCGTTGGCGGCAGGCCTGGTGCGCAGATAGTACGTGCCCGTCTT 25530 Query 65140 GAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCGGC 65199 ||| || ||| | || || |||||||| | | | | || | ||||| Sbjct 25529 GAGTCCCTTCTTCCAGCCGTAAAAGTGCATCGAGGTGAGCTGTCCAAACGTCGGCGATTG 25470 Query 65200 CACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTC 65259 || ||| || ||||| ||||| || |||| | |||||||| |||||||| || Sbjct 25469 CAGATGAATGTTCAAGCTTTGACTTTGGCAGATGAATGCTCCACGATCGGCAGCCATCTC 25410 Query 65260 AATGATACGACGTCC-CGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATTG 65318 ||||| |||| | ||| |||||||| || |||||||| || || | | | | | Sbjct 25409 GATGAT-CGACTTTTGCGAAATCTCCCACACCGTCTTGTAGAG-CGCCTTGATCCTGTCG 25352 Query 65319 GA-ATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGAC 65377 | || | || || |||| || || | | | ||||| ||||| || ||| | Sbjct 25351 GGTATGCCGGGAACGTTTTGGATGGAGCCGCCATGGGCAATGATGCGGTTTTTCATGCCC 25292 Query 65378 TCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAAC 65437 || ||||| |||| |||| || | | | ||| | |||| ||||||||| Sbjct 25291 TCATTCCACAGACCCTGCTCGACCAGCTCGCGCAGCAACCACGGGTTGACAACTTGGAAC 25232 Query 65438 TCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTG 65497 || |||| ||| |||||||| ||||||||||| ||| ||| |||||| |||| || Sbjct 25231 TCTCCGGCCAGCACACGACGCGTGTAGATGTTGGATGTGTAGGGCTCAAAGCATTCGTTG 25172 Query 65498 TTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGC 65557 ||| ||||| || | || || || || |||||||| |||| || || ||||| || Sbjct 25171 AAGCCGAGAATCTGAGAGGTGGAGGCGGTAGGCATGGGTGCGAGCAGCAGCGAGTTGCGA 25112 Query 65558 AATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACA--TCGGTTTATCGT 65615 | |||| | ||| ||| || | ||| | ||||| || | | || Sbjct 25111 AGACCGTGCTCGGAAATCTTGCTCTTCAGCGTGGTCCAATCCCACAAGTCAGAAGGT-GT 25053 Query 65616 CGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAGGA 65675 ||| |||||| || | ||||| ||| | ||| || || || || Sbjct 25052 G-------ACGCCCCACATGTCGTACTGCAGCTCTCCCTTGGAGGCGGGCGAGCCTTGGT 25000 Query 65676 AACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAAT 65735 | | | ||| || || | |||||| | || | ||| |||||||| | Sbjct 24999 AGGTCTGGTAGGGACCGTCGCGTTGGGCAAGCTCGCAAGAGCGCTCCAGTGCGGCGTGGT 24940 Query 65736 AAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATAC 65795 | |||||||||||||| | || || | || || || || | | ||| | Sbjct 24939 AGATGGTCTCGAAAATTTGCTTGTTGAGCTTGCGCGCTTCGGGCGAGTCAAAGGCCATGC 24880 Query 65796 CCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCA 65855 | | | | |||| |||||||||||||| ||||| || ||||||||||| ||||| | Sbjct 24879 CGAGGATCATGAAAGCATCGGCCAGACCTTGCACTCCGATGCCGATGGGACGGTGACGGA 24820 Query 65856 AATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAAT 65915 | |||||||| | |||||| || || ||||| |||| ||||| ||||| |||| | Sbjct 24819 AGTTGGAACGACGCGCCTCCTCGACGGGATAGTAGTTGACGTCGATGATGCGGTTCAGGT 24760 Query 65916 TGCGTGTCACCACATGCACGATACGTCGCAATT--GTTCGAAATCAAAATGTT-TAGGAC 65972 ||| ||| | ||| | | || || | ||| || || ||| || ||| Sbjct 24759 TGC----CAC-AGATGACCTTTGCGACGGCGTGAAGTT-----TCTTAAAGTTGTACGAC 24710 Query 65973 --GATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGAC 66030 | ||| |||| || | ||| || ||||| | ||||| | ||||||||| Sbjct 24709 TTGGTCGA-AGTGTCG------ATGAACGATGGCAGGGCGATGGATGCCAAGTTGCAGAC 24657 Query 66031 AGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTAT 66090 || | |||||| || || | ||||||| || ||||||||||| ||||||| || Sbjct 24656 GGCAACCTCGTCTGGCGCAGAGTACTCGATGATCTCGGTGCACAGGTTACTGCTCTTGAT 24597 Query 66091 GGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGG 66150 |||||||| |||| || || |||||||| || ||||||||||||| ||| | || Sbjct 24596 GGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTCGCCGCATCCTTGTACAGCATAAAGGG 24537 Query 66151 AGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGT 66210 |||| ||||| | ||| | || | |||||||| ||| || | ||||| | || Sbjct 24536 GTTGCCAGTCTCGATTTGCGCTTCCAAGATGGCGTACCACAGCTTTTGCGCCTTGATGGT 24477 Query 66211 ACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCA 66270 || || | ||| | |||||| | |||||| || ||| || || || | Sbjct 24476 GCGCTTGGCGCGACCCTCCGCTTCGTACTTTTCGTACAGCGCTTCAAACTCCTCGCCATA 24417 Query 66271 TACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTC 66330 ||||||| || | || |||| || || ||||||| ||| || || | |||||| Sbjct 24416 GACTTCGGCCATGCCAGGGCACTCGTTGGGGCACATCAAGCTCCACTCGCCGTTCTGTTC 24357 Query 66331 TACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTG 66390 ||||| ||| || || || || ||||| || |||||||| || ||||||||||| Sbjct 24356 GACACGCTTCATGAAGAGGTCTGGGATCCACAGCGCGTAGAACAGCTCGCGTGCTCGCAC 24297 Query 66391 CTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGG 66450 ||||| | |||||||| ||||||| ||| |||||||| || ||||| | ||||| || Sbjct 24296 TTCCTCCTTTCCGTGATTCTTGCGCAGGTCCAGGAACTCGAAAATGTCAGAGTGCCAGGG 24237 Query 66451 TTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGC 66510 || ||||||||| || | ||| | ||| |||||||||||| |||||||| || Sbjct 24236 CTCGGCGTAGATGGCAAAGGCGCCAGGCCTCTTGTTGCCACCTTGGTCAACGTAGCGTGC 24177 Query 66511 GACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTC 66570 ||||||||||| |||| ||| || |||| ||||| |||||||||||| | Sbjct 24176 AGTGTTGTTGAAGACTCGCAGCATGGGGACGATGCCGTTGCTAAAGCCATTGGTGCCTGC 24117 Query 66571 GATGGGGGATCCTCGTGCC-CGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCT 66629 ||| | ||| ||||| || || | ||| | |||| || ||||||||||| |||| Sbjct 24116 AATGTAGCTTCC-GGTGCCGCGAATGTTGTGGATGCTCAGGCCTATACCACCGGCAGTCT 24058 Query 66630 T-CGA--GATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCT 66686 | | | ||||| |||| | | |||| | | |||||||| ||| |||| ||| Sbjct 24057 TGCTAATCATGGC-GCACGTCTTGAGAGTGTC--GTAGATGCCGTCGATGCTGTCATCCT 24001 Query 66687 TGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGG 66746 | ||| | |||| |||| || ||||| || | || ||| |||| |||||||| Sbjct 24000 TCATGCAGACGAGGAAGCACGACGAGAGTTGAGGGTGAGGCGTGCCGGCGTTGAAGAGGG 23941 Query 66747 TGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCAT 66806 | || | ||||| |||||||| | |||||| ||||||||||| || || | || Sbjct 23940 TCGGGGAGGCGTGGGTAAAGTACTTTTCGGACATGAGGTTGTACGTCTCAATCACGGAAT 23881 Query 66807 CAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGA 66866 | | || ||||| || || || | || ||||| | | || ||||| |||||| Sbjct 23880 CGACGTCATCGCCGTGGATGCCAACGGCGACGCGCATAATCATGTGCTGAGGACGTTCGG 23821 Query 66867 CCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTA 66924 | | || | ||||| | | | ||| || || ||||| ||||||| |||||||| Sbjct 23820 CGACGCGTCCATTGATGCGAAGCAGGTATGATCGCTCCAGCGTCTTGAAGCCAAAGTA 23763 >seq233 Length=223772 Score = 194 bits (214), Expect = 1e-44 Identities = 296/418 (71%), Gaps = 4/418 (1%) Strand=Plus/Minus Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || ||| | || |||||||| ||||||||||| ||||| |||||||| || |||| || Sbjct 43659 CACGTGCTCGCCTTCTTTGCAGCTTCGGACGGCATCGTGAATGAGAACTTGGTGGAGCGA 43600 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| |||| |||||||||| | ||||| | || || ||||| ||||| || ||| Sbjct 43599 TTCTCGCAAGAGGTGCAAGCAGCAGAGGCCAGATGCTTTTACGGTTTCCAAATCATGATG 43540 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 ||||| | |||||||||| ||| | | |||||||| || || ||| | || | | | Sbjct 43539 GAGAACATTCACTCGGAGACTTACTCTCTGCTCATCGACACTTATATCCGCGAACCAGAG 43480 Query 61384 GAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGAT 61443 | | || ||||| ||||| |||||||||| || | ||| |||| || || || Sbjct 43479 CAGAGAGAGTTCTTGTTTGATGCCGTCGAGACGATTCCCGTGGTCAAGCAAAAGGCTGAC 43420 Query 61444 TGGGCCTTCAATTGGATCACCAGTACA-ACG-GCTACATTTGGTGAACGATTGCTGGCAT 61501 ||||| ||| |||||| || ||| ||| || | || || || || | || | Sbjct 43419 TGGGCACTCAGGTGGATCTCC--GACAGACGATCTTCCTTCTCCGAGAGACTGATCGCCT 43362 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 |||| | |||||||| | || ||| ||||| ||||| | ||||||||| | |||| Sbjct 43361 TTGCCGCCGTCGAGGGCATCTTCTTCTCCGGATCTTTTGCTTCCATCTTTTGGCTCAAGA 43302 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGG 61619 | | || || ||||| || |||| |||| ||||||| | || || || ||||| || Sbjct 43301 AGAGGGGTCTGATGCCGGGACTGAGCTTCTCCAATGAGCTCATCTCCCGAGACGAAGG 43244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397565650000400