Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq81389 127 3e-27 seq107418 96.9 5e-18 seq65667 91.5 2e-16 seq108311 89.7 7e-16 seq8960 80.6 4e-13 >seq81389 Length=274 Score = 127 bits (140), Expect = 3e-27 Identities = 169/235 (72%), Gaps = 21/235 (9%) Strand=Plus/Plus Query 14 CACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTT 73 ||||||||||| ||||| || ||||| || ||| | | || ||| | | |||||||| Sbjct 2 CACCGGGCAGGTGTCAGGCCATATACGTCATCTTTCGATTTT-GCATAGCCATGTGTTTT 60 Query 74 TAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCAC 133 | ||||||||||| | || ||| ||||| ||| | | | Sbjct 61 TGTTAAACAGTCGCCTGGGCCTTTTCACTGCG----------GCTGATATTG-------C 103 Query 134 CAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACA 193 | ||| | ||||||||||||||||||| ||||||||||||||| ||||||| ||| Sbjct 104 TATCAGCG---CCCCTTCTCCCGAAGTTACAGGGCCATTTTGCCGAGTTCCTTAGCCATG 160 Query 194 GTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 ||||| ||| | |||||| ||||||| | ||| |||||||||||||||||||| Sbjct 161 ATTCACTCGAGCACCTTAGGATTCTCTCCTCGACTACCTGTGTCGGTTTACGGTA 215 >seq107418 Length=414 Score = 96.9 bits (106), Expect = 5e-18 Identities = 137/190 (72%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 65 CTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA--C 122 ||||||||||| ||||||||||| || | ||| | ||| ||| | |||| | | Sbjct 1 CTGTGTTTTTAATAAACAGTCGCAGCCACCGATTTTTTGCAACCCCGTTGGGCTCCATCC 60 Query 123 ACGTCG---TTCACCAGC-AGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCG 178 || | |||||| | | ||||| |||||| |||||||||||| | || ||||||| Sbjct 61 GCGAGGGACTTCACCTACTAAAGGCACACCTTCTTCCGAAGTTACGGTGTCAATTTGCCG 120 Query 179 AATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCG 238 | |||||| || ||||| | | | |||||||| || ||| | | |||| |||||| Sbjct 121 AGTTCCTTCTCCTGAGTTCTCTCAAGCGCCTTAGAATACTCATCTCGCGCACCAGTGTCG 180 Query 239 GTTTACGGTA 248 |||| ||||| Sbjct 181 GTTTGCGGTA 190 >seq65667 Length=119 Score = 91.5 bits (100), Expect = 2e-16 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 146 CCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAAC 205 ||||||||||||||||||||| | | |||||||| ||||||||| | ||||| ||| | Sbjct 113 CCCTTCTCCCGAAGTTACGGGTCTAATTTGCCGAGTTCCTTAACAAGCTTTCACTCGAGC 54 Query 206 GCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 ||||| | || ||| | | | |||||||||||||| |||| Sbjct 53 GCCTTTGGATATTCTCCTCGTCTACCTGTGTCGGTTTGTGGTA 11 >seq108311 Length=563 Score = 89.7 bits (98), Expect = 7e-16 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 147 CCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACG 206 |||| |||||||||||||| ||| |||||||| |||||| || ||||| | | | || Sbjct 457 CCTTTTCCCGAAGTTACGGTACCAATTTGCCGAGTTCCTTCTCCCGAGTTCTCTCAAGCG 398 Query 207 CCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 |||||| || ||| | | |||||||||||||||| ||||| Sbjct 397 CCTTAGAATACTCATCTCGCCCACCTGTGTCGGTTTGCGGTA 356 >seq8960 Length=117 Score = 80.6 bits (88), Expect = 4e-13 Identities = 77/98 (79%), Gaps = 3/98 (3%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTT---ACCGTCTTCG 57 |||| ||||| ||||||||||||||||| || ||||| ||| ||| ||| ||| | Sbjct 7 CTTAACCTTCAGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTGAAGCCGACTTAG 66 Query 58 CACGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCT 95 || | ||||||||||| |||||||||||| ||| || Sbjct 67 CAGAGCCCTGTGTTTTTGCTAAACAGTCGCTACCCCCT 104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693651950873