Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq20375 183 5e-44 seq75135 118 2e-24 seq100886 114 2e-23 seq99841 105 1e-20 seq8699 104 4e-20 seq64869 82.4 1e-13 seq74826 80.6 4e-13 >seq20375 Length=261 Score = 183 bits (202), Expect = 5e-44 Identities = 189/245 (77%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| ||||||||||||| | |||||| | ||||||||||||||||||| Sbjct 244 CCCACGCTTTCGCTCCTCAGCGTCAGTACCGGTCCAGTGAGCCGCCTTCGCCACTGGTGT 185 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || | | ||||||||| |||||||| |||||| | | |||| | ||||| | | || Sbjct 184 TCTTGCTAATATCTACGAATTTCACCTCTACACTAGCAGTTCCACTCACCTCTACCGGAC 125 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGG-GTTGAGCCCATAGTTTTCACATCTGAC 179 |||||| | |||| ||||| ||| | | ||| ||||||| | | |||||| |||||| Sbjct 124 TCAAGATACCCAGTATCAAAGGCA-GTTCTGGAGTTGAGCTCCAGGCTTTCACCTCTGAC 66 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 || | |||||||| || |||||| |||| | | |||| | |||||| ||| ||| | Sbjct 65 TTAAATATCCGCCTACGAGCGCTTTACGCCCAGTGATTCCGAACAACGCTAGCCCCCTTC 6 Query 240 GTATT 244 ||||| Sbjct 5 GTATT 1 >seq75135 Length=110 Score = 118 bits (130), Expect = 2e-24 Identities = 82/93 (88%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| ||||||||||||| | | |||| | ||||||||||||||||||| Sbjct 18 CCCACGCTTTCGCACCTCAGCGTCAGTAATGGACCAGTGAGCCGCCTTCGCCACTGGTGT 77 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACAC 93 ||||||| ||||||||| |||||||| |||||| Sbjct 78 TCCTCCGAATATCTACGAATTTCACCTCTACAC 110 >seq100886 Length=111 Score = 114 bits (126), Expect = 2e-23 Identities = 81/93 (87%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| |||||||||||||| || | |||| | |||||||||||||||||| Sbjct 19 CCCACGCTTTCGAGCCTCAGCGTCAGTAACGGACCAGTATGTCGCCTTCGCCACTGGTGT 78 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACAC 93 || |||| ||||||||| |||||||| |||||| Sbjct 79 TCTTCCGAATATCTACGAATTTCACCTCTACAC 111 >seq99841 Length=143 Score = 105 bits (116), Expect = 1e-20 Identities = 85/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| || | ||||||||| |||||| |||||||||| ||||| Sbjct 4 CCCACGCTTTCGTGCATGAGCGTCAGTACAGGTCCAGGGGATTGCCTTCGCCATCGGTGT 63 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCC 103 ||||||| ||||||||||||||||| ||||||| ||||||||| Sbjct 64 TCCTCCGCATATCTACGCATTTCACTGCTACACGCGGAATTCC 106 >seq8699 Length=112 Score = 104 bits (114), Expect = 4e-20 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 167 TTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAAC 226 |||||| ||||||| ||||||| ||||| | ||||||| ||||| | |||||||||||| Sbjct 87 TTTCACCGCTGACTTACCTTCCCACCTACGCACCCTTTAAACCCAGTGAATCCGGATAAC 28 Query 227 GCTTGCCACCTACGTATTACCGCGGCT 253 |||||| ||| ||||||||||||||| Sbjct 27 GCTTGCACCCTCCGTATTACCGCGGCT 1 >seq64869 Length=103 Score = 82.4 bits (90), Expect = 1e-13 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || ||||| || |||||| |||| ||| |||||| |||||| | ||||||||||||| Sbjct 75 CCACCTACGAGCTCTTTACGCCCAGTAATTCCGGACAACGCTCGGACCCTACGTATTACC 16 Query 248 GCGGCTGCTGGCACG 262 ||||||||||||||| Sbjct 15 GCGGCTGCTGGCACG 1 >seq74826 Length=129 Score = 80.6 bits (88), Expect = 4e-13 Identities = 75/93 (81%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| ||||||| |||| | || || || | | |||||||| | |||||| Sbjct 126 CCCACGCTTTCGTGCCTCAGTGTCAATGACCGTGTAGTGAGCTGCCTTCGCAATTGGTGT 67 Query 61 TCCTCCGT-ATATCTACGCATTTCACCGCTACA 92 || | || ||||||| |||||||||||||||| Sbjct 66 TC-TATGTCATATCTAAGCATTTCACCGCTACA 35 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 827907167171