Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavaria_20fumosa_20[genbank_20GCA_5F001179745.1_202015-07-08] 111,201 sequences; 70,469,476 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq32446 122 3e-25 seq5797 111 5e-22 seq51506 107 7e-21 seq90585 89.7 2e-15 >seq32446 Length=174 Score = 122 bits (134), Expect = 3e-25 Identities = 117/149 (79%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 275 CAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCA 333 |||| | ||| | |||||||||| | |||||||||| ||||| | ||| | ||| ||| Sbjct 26 CAATGCAAAGTTGTAGTGAAGGTTCACGGGGTCTTTCCGTCCCGTGGCGGGTAACCGGCA 85 Query 334 TCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACG 393 |||| || |||| |||||||||||||| |||| |||||||| | || ||| Sbjct 86 TCTTCACCGATACTACAATTTCACCGGGCTCGTGGAGGAGACAGCGTTCAACTCATTAGA 145 Query 394 CCATTCGTGCAGGTCGGAACTTACCCGAC 422 ||||||||||||||||||||||||||||| Sbjct 146 CCATTCGTGCAGGTCGGAACTTACCCGAC 174 >seq5797 Length=120 Score = 111 bits (122), Expect = 5e-22 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 |||||||||| |||| |||| ||| | ||||||| || | | | ||||||||| | Sbjct 2 CGGGGTCTTTCCGTCTGACCGCAGGAACCTCGCATCTTCACGAGGAATTCAATTTCACTG 61 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACC 418 |||| || | |||||||| ||| |||| |||||||||||||||||||||||||||||| Sbjct 62 AGCCTCTGCTGGAGACAGCGGGGAAGTCATTACGCCATTCGTGCAGGTCGGAACTTACC 120 >seq51506 Length=156 Score = 107 bits (118), Expect = 7e-21 Identities = 112/143 (78%), Gaps = 3/143 (2%) Strand=Plus/Minus Query 282 AAGCTATAGTGAAGGTCCC-GGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTAC 340 ||| | |||||||||| | ||||||||| ||||| | ||| | ||| || |||| || Sbjct 142 AAGTTGTAGTGAAGGTGCATGGGGTCTTTCCGTCCCGTTGCGGGTAACCGGCGTCTTCAC 83 Query 341 TCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTC 399 ||| ||||||||||| || ||| ||||||||| | || ||||||| |||||| Sbjct 82 CGATACCACAATTTCACCGAGCTCATGGCTGAGACAGC-GCCCAGATCGTTACACCATTC 24 Query 400 GTGCAGGTCGGAACTTACCCGAC 422 ||||||||||||||||||||||| Sbjct 23 GTGCAGGTCGGAACTTACCCGAC 1 >seq90585 Length=132 Score = 89.7 bits (98), Expect = 2e-15 Identities = 100/132 (76%), Gaps = 4/132 (3%) Strand=Plus/Plus Query 129 CCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACGGT-- 186 || |||| ||||||||||| |||| ||| | |||||||||||||| || | | | Sbjct 3 CCTACCATGCACTGTCCCCGACCCGGATAACGGGCCAAGGTTAGAA--CCTCAAATGAAC 60 Query 187 CAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCA 246 ||| |||||||||||| | |||||| | ||| |||| |||| || || |||||| Sbjct 61 CAGGGTGGTATTTCAAGGTTGGCTCCACGAGAACTGGCGTCCCCGCTTCTAAGCCTCCCA 120 Query 247 CCTATCCTACAC 258 |||||||||||| Sbjct 121 CCTATCCTACAC 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1700506914176