Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555
.1_202015-11-17] 834 sequences; 24,807,186 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq54 179 7e-43
seq73 143 5e-32
seq14 109 1e-21
>seq54
Length=52904
Score = 179 bits (198), Expect = 7e-43
Identities = 128/146 (88%), Gaps = 1/146 (1%)
Strand=Plus/Plus
Query 8 TCCGGCCGGGCCTTTCCTTCTGGGGATCC-GCATGCCCTTCACTGGGTGTGCCGGGGAGC 66
||||| ||||||| ||| |||| || || | ||| | || ||| ||||||| ||||| |
Sbjct 1479 TCCGGTTGGGCCTTACCTCCTGGTGAGCCCGTATGTCGTTTACTCGGTGTGCGGGGGAAC 1538
Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTA 126
||||| |||||||||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct 1539 CAGGAATTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCATATGCCCGAATACATTA 1598
Query 127 GCATGGAATAATAGAATAGGACGTGC 152
||||||||||||||||||||||||||
Sbjct 1599 GCATGGAATAATAGAATAGGACGTGC 1624
>seq73
Length=46184
Score = 143 bits (158), Expect = 5e-32
Identities = 108/126 (86%), Gaps = 1/126 (1%)
Strand=Plus/Plus
Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252
||||||| || ||||| | |||||||| ||| ||||||||||||||| |||||| ||
Sbjct 1 ATAGGGACGGTTGGGGGCATTAGTATTCAGTTGCTAGAGGTGAAATTCTTAGATTTACTG 60
Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
||||||||||||||||||||| || ||||||| |||||||||||||| ||||||| ||
Sbjct 61 AAGACTAACTACTGCGAAAGCATTTGCCAAGGACGTTTTCATTAATCA-AGAACGAAGGT 119
Query 313 TAGGGG 318
||||||
Sbjct 120 TAGGGG 125
>seq14
Length=72078
Score = 109 bits (120), Expect = 1e-21
Identities = 85/100 (85%), Gaps = 1/100 (1%)
Strand=Plus/Minus
Query 8 TCCGGCCGGGCCTTTCCTTCTGGGGATCC-GCATGCCCTTCACTGGGTGTGCCGGGGAGC 66
||||| ||||||| ||| |||| || || | ||| | || ||| ||||||| ||||| |
Sbjct 100 TCCGGTTGGGCCTTACCTCCTGGTGAGCCCGTATGTCGTTTACTCGGTGTGCGGGGGAAC 41
Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAG 106
||||| ||||||||||||||||||||||||||||||||||
Sbjct 40 CAGGAATTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915192367232
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |