Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq798 576 4e-162 seq658 538 1e-150 seq759 295 2e-77 seq702 194 5e-47 seq791 178 4e-42 >seq798 Length=516 Score = 576 bits (638), Expect = 4e-162 Identities = 390/431 (90%), Gaps = 7/431 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 89 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATC 148 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 149 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 208 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 ||||| ||||||||||| |||| || ||| || || |||| ||||||||||||| Sbjct 209 AGCCCGTAAAGGACCTTAAAGCCAAAAGGTGGGACGTTAATCCCAGCTCCGCTTCATTGA 268 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTC-ACTTGCGCCGAAACGGCTCCCACTT 245 |||||||||||||||| |||||||||||||| || |||||||| |||||||||| Sbjct 269 ATAAGTAAAAAAACGATGGAGGTAGTGGTATTTCAACCGGCGCCGAA---GCTCCCACTT 325 Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGA-GTCAAGCTCAAC-AGGGTC 303 |||||||||| || ||| |||||||| ||| |||||| |||||||||||| |||||| Sbjct 326 ATTCTACACCCTCCATGTCTTTTCACAATGTCAAACTAGATGTCAAGCTCAACAAGGGTC 385 Query 304 TTCTTTCCCCGCTGA-TTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 386 TTCTTTCCCCGCTGACTTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 445 Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 446 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 505 Query 423 CATTTGGCTAC 433 ||||||||||| Sbjct 506 CATTTGGCTAC 516 >seq658 Length=762 Score = 538 bits (596), Expect = 1e-150 Identities = 322/337 (96%), Gaps = 3/337 (1%) Strand=Plus/Minus Query 207 GGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCAT 266 |||||||||||||||| |||||||| |||||||||||||||||||| || ||| | Sbjct 761 GGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACTTATTCTACACCCTCCATGTCTT 705 Query 267 TTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCA 326 ||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 704 TTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCA 645 Query 327 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTT 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 644 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTT 585 Query 387 AATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCA 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 584 AATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCA 525 Query 447 TAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCA 506 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 524 TAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCA 465 Query 507 CTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||| ||||||||| Sbjct 464 CTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 428 >seq759 Length=560 Score = 295 bits (326), Expect = 2e-77 Identities = 165/166 (99%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 375 GGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACC 434 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACC 60 Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 120 Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTT 540 ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 121 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTT 166 >seq702 Length=668 Score = 194 bits (214), Expect = 5e-47 Identities = 115/120 (96%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATC 61 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 60 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 1 >seq791 Length=524 Score = 178 bits (196), Expect = 4e-42 Identities = 124/136 (91%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTA-T 65 |||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||| | Sbjct 133 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGT-CCCCTTAGGACACCTGCGTTACT 75 Query 66 GGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGAT 125 |||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||| Sbjct 74 CTTTTAACAGATGTGCCG-CCCAGCCAAACT-CCCACCTGACAATGTCTTCAACCCGGAT 17 Query 126 CGGCCCGCGAAGGACC 141 | ||||| ||||||| Sbjct 16 CAGCCCGTAAAGGACC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635186362432