Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq740 618 1e-174 seq760 237 5e-60 seq14 111 5e-22 >seq740 Length=598 Score = 618 bits (684), Expect = 1e-174 Identities = 407/445 (91%), Gaps = 5/445 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||| ||||||||||| | |||||| || |||||||||||||||||| Sbjct 446 GTACTCATTCCAATTGCAAGACCCAAAGG-GCCCTGCATTGTTATTTATTGTCACTACCT 388 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 387 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 328 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 327 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGCCACCATGGTA 268 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||| || Sbjct 267 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGAAGCATCGCC-GCA 209 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| ||||||| ||||||||||||| || | | ||||| Sbjct 208 CAAGGCCATGCGATTCGAGAAGTTATCATGAATCACCAAGAAGGGCTTTCACCCATTGGT 149 Query 301 TTTTTATCTAATAAATACACCCCTT--CCGAAGTCGGGG-TTTTTAGCATGTATTAGCTC 357 ||||||||||||||||||||||||| | |||||||||| |||| ||||||||||||||| Sbjct 148 TTTTTATCTAATAAATACACCCCTTTCCAGAAGTCGGGGCTTTTCAGCATGTATTAGCTC 89 Query 358 TAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAA 417 |||||||||||| ||||||||||||| ||||||| ||||||||||| ||||||||||||| Sbjct 88 TAGAATTACCACAGTTATCCATGTAGCAAGGTACCATCAAATAAACTATAACTGATTTAA 29 Query 418 TGAGCCATTCGCAGTTTCACTGTAT 442 |||||||||||||||||||| |||| Sbjct 28 TGAGCCATTCGCAGTTTCACAGTAT 4 >seq760 Length=556 Score = 237 bits (262), Expect = 5e-60 Identities = 147/156 (94%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAAC 409 |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||| ||||| Sbjct 556 ATTAGCTCTAGAATTACCACAGTTATCCATGTAGCAAGGTACCATCAAATAAACTATAAC 497 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGATTGCTTATACTTAGACATGCATG 468 |||||||||||||||||||||||||||| |||| | ||| ||||||||||||||||||| Sbjct 496 TGATTTAATGAGCCATTCGCAGTTTCACAGTATGAATTTGTTTATACTTAGACATGCATG 437 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||| Sbjct 436 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 401 >seq14 Length=72078 Score = 111 bits (122), Expect = 5e-22 Identities = 74/81 (91%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||| ||||||||||| | |||||| || |||||||||||||||||| Sbjct 259 GTACTCATTCCAATTGCAAGACCCAAAGG-GCCCTGCATTGTTATTTATTGTCACTACCT 317 Query 61 CCCCGTGTCGGGATTGGGTAA 81 ||||||||||||||||||||| Sbjct 318 CCCCGTGTCGGGATTGGGTAA 338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510387403264