Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq37 354 1e-95 seq641 223 6e-56 seq743 196 9e-48 seq713 190 4e-46 seq156 100 5e-19 >seq37 Length=8170 Score = 354 bits (392), Expect = 1e-95 Identities = 265/308 (86%), Gaps = 2/308 (1%) Strand=Plus/Minus Query 12 GCCGGGCCTTTCCTTCTGGGGATCC-GCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGG 70 || || |||| ||| |||| | ||| | |||| ||| ||||||||||| ||||| ||||| Sbjct 7334 GCTGGACCTTACCTCCTGGTGGTCCTGTATGCTCTTTACTGGGTGTGCAGGGGAACCAGG 7275 Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCAT 130 | |||||| ||||||||||||||||||||||||||||| | || ||||||||||||||| Sbjct 7274 AATTTTACCTTGAAAAAATTAGAGTGTTCAAAGCAGGCAATCGCCCGAATACATTAGCAT 7215 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 7214 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGATCGCCGTAATGAT 7155 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||||||||| |||||||| | |||||| ||| ||||||||||||||| |||| | Sbjct 7154 TAATAGGGACGGTCGGGGGCATTGGTATTCCGTTGCTAGAGGTGAAATTCTTAGATTGAC 7095 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 |||||| ||| ||||||||||| || ||||||| ||||||||| |||| ||||||| Sbjct 7094 GGAAGACCAACAACTGCGAAAGCATTTGCCAAGGACGTTTTCATTGATCA-AGAACGAAG 7036 Query 311 GTTAGGGG 318 |||||||| Sbjct 7035 GTTAGGGG 7028 >seq641 Length=827 Score = 223 bits (246), Expect = 6e-56 Identities = 181/219 (83%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 100 AAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTA 159 |||||||||| | || ||||||||||| ||||||||||||||||| ||| ||||| |||| Sbjct 1 AAAGCAGGCCATCGCCCGAATACATTACCATGGAATAATAGAATACGACATGCGGCTCTA 60 Query 160 TTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATT 219 ||||||||||||||||| ||||||||||||||||| || |||||||| | ||||| Sbjct 61 TTTTGTTGGTTTCTAGGTTAGCCGTAATGATTAATAGCGACGGTCGGGGGCATTGGTATT 120 Query 220 CAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCAC 279 | ||| |||||||||||| || |||| | |||||| ||| ||||||||||| || | Sbjct 121 CCGTTGCTAGAGGTGAAATTTTTAGATTGACGGAAGACCAACAACTGCGAAAGCATTTGC 180 Query 280 CAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || || ||||||||| |||| ||||||| |||||||| Sbjct 181 CAGGGNNGTTTTCATTGATCA-AGAACGAAGGTTAGGGG 218 >seq743 Length=288 Score = 196 bits (216), Expect = 9e-48 Identities = 175/219 (80%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 100 AAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTA 159 |||||||||| | || |||||| |||| ||||||||||||||||| |||||||||||||| Sbjct 1 AAAGCAGGCCATCGCCCGAATAGATTACCATGGAATAATAGAATAAGACGTGCGGTTCTA 60 Query 160 TTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATT 219 ||||| | |||| |||| ||||||||||||||||| ||| |||||||| | || || Sbjct 61 TTTTGGTCGTTTNNAGGATCGCCGTAATGATTAATATGGACGGTCGGGGGCATACGTTTT 120 Query 220 CAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCAC 279 | ||| ||||| ||| ||||| | || | |||||| ||| |||||||||| || | Sbjct 121 CCGTTGCTAGAGGAGAATTTCTTAGTTTGACGGAAGACCAACAACTGCGAAAGGATTTGC 180 Query 280 CAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||| | ||||||||| |||| |||| | |||||||| Sbjct 181 CAAGCAAGTTTTCATTGATCA-AGAACTATGGTTAGGGG 218 >seq713 Length=287 Score = 190 bits (210), Expect = 4e-46 Identities = 138/160 (86%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 88 ATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGA 147 ||||||||||||||| ||||| | || ||||||||||||||||||||||||||||||| Sbjct 162 ATTAGAGTGTTCAAAACAGGCAATCGCCCGAATACATTAGCATGGAATAATAGAATAGGG 103 Query 148 CGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGG 207 ||||||||||||||||||||||||||| || ||||||||||||||||||||| || | Sbjct 102 CGTGCGGTTCTATTTTGTTGGTTTCTATGATCGCCGTAATGATTAATAGGGACGTTCTGT 43 Query 208 GGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 || | |||||| ||| ||||||||||||||| |||| Sbjct 42 GGCATTGGTATTCCGTTGCTAGAGGTGAAATTCTTAGATT 3 Score = 158 bits (174), Expect = 2e-36 Identities = 114/132 (86%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 114 CTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCT 173 ||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||| | Sbjct 156 CTCTAATACATTAGCATGGAATAATAAAATAGGACGGGCGGTTCTATTTTGTTGGTTTTT 215 Query 174 AGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGT 233 |||| |||||||||||||||||| || |||||||| | |||||| || |||||| Sbjct 216 AGGATCGCCGTAATGATTAATAGTGACGGTCGGGGGCATTGGTATTCCGTTTCTAGAGGT 275 Query 234 GAAATTCTTGGA 245 ||||||||| || Sbjct 276 GAAATTCTTAGA 287 >seq156 Length=42092 Score = 100 bits (110), Expect = 5e-19 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 ||||||||||||||| |||| |||||||||||||| || ||||||||||| | |||||| Sbjct 42020 TAGCATGGAATAATAAAATAAGACGTGCGGTTCTAATTCCTTGGTTTCTAGAATCGCCGT 42079 Query 185 AATGATTAATAGG 197 ||||||||||||| Sbjct 42080 AATGATTAATAGG 42092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915192870592