Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq37 526 9e-147 seq724 172 2e-40 seq702 140 1e-30 seq695 116 2e-23 seq662 100 1e-18 >seq37 Length=8170 Score = 526 bits (582), Expect = 9e-147 Identities = 529/681 (78%), Gaps = 39/681 (6%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| |||||||| ||| |||||| || ||| | ||||||| |||||| | | ||||||| Sbjct 5483 TTCTACGAGTCGCGTTACTTGGGAGTGTAGCGCAAAATGGGTGGTAAACTCCATCTAAAG 5424 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 ||||||||||| |||||||||||| |||||| |||| ||||||||||||||||| Sbjct 5423 CTAAATATTGGTGGAAGACCGATAGCGAACAAGTNCCGTGAGGGAAAGATGAAAAGCACT 5364 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACT 213 ||||||||||||||||| || |||||||||||||||||||||| || ||| | ||| | Sbjct 5363 TTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGATTGAAGTCAGTCG 5304 Query 214 TGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGTCAGGCCAGCAT 273 || | | | ||| || | || || |||| | || || | | || || ||| Sbjct 5303 TGTCTATTGG-GTTCAGCCAGT---TCTGCTGGTGTATTCC-CTTTAGACGGGTCAACAT 5249 Query 274 CAGCTCGGG-CGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTGTTATAG 332 ||| || | |||| |||||| ||| |||||||||| | |||||||| ||||||||| Sbjct 5248 CAGTTCTGATCGGT-GGATAAGGGCTGGAGGAATGTGGCACTCTTCGGGGTGTGTTATAG 5190 Query 333 CCC-------------------GGG---GTGGAATGCGGCCCGCCTGGA---CTGAGGTC 367 || ||| | ||||||| || ||||| | | | ||| Sbjct 5189 CCTCCTGTCGCATACACTGGTTGGGACTGAGGAATGCAGCTCGCCTTTATGGCCGGGGTT 5130 Query 368 CGCGCTC---CG-GCT-AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACAC 422 ||| | | || ||| |||||| || | ||||| | ||| || ||||||||| ||||| Sbjct 5129 CGCCCACGTTCGAGCTTAGGATGTTGACAAAATGGCTTTAAACGACCCGTCTTGAAACAC 5070 Query 423 GGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAA 482 ||||||||||||||||||| | |||||||||||| ||||||||| || |||||||||||| Sbjct 5069 GGACCAAGGAGTCTAACATATCTGCGAGTGTTTGAGTGTCAAACTCGAGCGCGTAATGAA 5010 Query 483 AGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGAT 542 |||||| | ||| |||| || | || ||||| ||||||||||| ||| | | ||| Sbjct 5009 AGTGAATGTAGGAGGGATCCGC--AAGGAGCACCTTCGACCGATCCGGATCTTCTGTGAT 4952 Query 543 GGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 602 ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 4951 GGATTTGAGTAAGAGCATATATGCTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 4892 Query 603 GTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGT 662 | |||||||| ||||||||||||||||||||| |||| ||||| |||||||||||||||| Sbjct 4891 GCGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGT 4832 Query 663 CAAATTTGGGTATAGGGGCGA 683 | ||||||||||||||||||| Sbjct 4831 CGAATTTGGGTATAGGGGCGA 4811 >seq724 Length=213 Score = 172 bits (190), Expect = 2e-40 Identities = 141/172 (82%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||||| || ||| |||||| | ||| |||||| || ||| | ||||||| |||||| Sbjct 42 TGTGATGCGTTTTCTACGAGTAGCGTTACTTGGGAGTGTAGCGCAAAATGGGTGGTAAAC 101 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 | |||||||||||||||||| |||||||||||| ||||||| ||||| |||||| Sbjct 102 TCTATCTAAAGCTAAATATTGGTGGCAGACCGATAGCGAACAAGTACAGTGAGGGAAAGA 161 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGG 194 ||||||||||||||| ||||||||||| || ||||||| |||||||||||| Sbjct 162 TGAAAAGCACTTTGGNNAGAGAGTTAAACAGTACGTGAATTTGTTGAAAGGG 213 >seq702 Length=229 Score = 140 bits (154), Expect = 1e-30 Identities = 137/176 (78%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 379 TAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAA 438 ||||||| | | ||||| | ||| | |||||||| |||||| |||||||||||||| Sbjct 227 TAGGATGTTTACAAAATGGCTTTAAACCACCCGTCTTAAAACACGAACCAAGGAGTCTAA 168 Query 439 CATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGG 498 ||| | |||||| ||||| | ||||||| || ||| |||||||||||||| | ||| ||| Sbjct 167 CATATCTGCGAGAGTTTGAGGGTCAAACTCGAGCGAGTAATGAAAGTGAATGTAGGAGGG 108 Query 499 AACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAA 554 | || | || ||||| ||||| ||||| ||| | | ||||||||||||||| Sbjct 107 ATCC--GAAAGGAGCACCTTCGACTGATCCGGATCTTCTGTGATGGATTTGAGTAA 54 >seq695 Length=211 Score = 116 bits (128), Expect = 2e-23 Identities = 94/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 90 AAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAG 149 ||||||||||||||| || ||||||||| ||||||| |||| |||||||| |||| Sbjct 211 AAAGCTAAATATTGGTGGAAGTCCGATAGCGTACAAGTACCGTGAGGGAAAGATGTAAAG 152 Query 150 CACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTG 203 | |||||||||| ||||||| || ||||||||||||| || ||||| || ||| Sbjct 151 AAATTTGGAAAGAAAGTTAAATAGTACGTGAAATTGTTAAATGGGAAACGATTG 98 >seq662 Length=235 Score = 100 bits (110), Expect = 1e-18 Identities = 115/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 379 TAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAA 438 ||| ||| || | ||||| | ||| || ||| ||||| ||||||||||||| || || | Sbjct 82 TAGAATGTTGACAAAATGGCTTTAAACGACCCCTCTTGAAACACGGACCAAGCAGACTGA 141 Query 439 CATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGG 498 || |||| ||||||| | | ||||| || ||||| |||||||| ||| ||| | ||| Sbjct 142 AATACGTGCGGGTGTTTGAGGGACAAACTCGAGCGCGAAATGAAAGGGAATGGACGAGGG 201 Query 499 AACCCGTGAGGGTGCACCATCGACCGATCCTGAT 532 | || | || | ||| ||||||||||| ||| Sbjct 202 AGCC--GCAAGGAGTACCTTCGACCGATCCGGAT 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079983290450