Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq37 367 2e-99 seq641 306 6e-81 seq490 114 2e-23 seq741 84.2 3e-14 >seq37 Length=8170 Score = 367 bits (406), Expect = 2e-99 Identities = 237/258 (92%), Gaps = 1/258 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6526 ACTCGCTGGCTCAGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 6585 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || || ||| | ||||||||||||||| || | Sbjct 6586 CCTGTTATTGCCTCAAACTTCCGTCGACTAGACGCCGACAGTCCCTCTAAGAAGTCAAAC 6645 Query 122 -ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 |||| ||| || || | ||||||||||||||||||||||||||||||||||||||| Sbjct 6646 GACCAGCCAAAGCCGGCCTGACTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 6705 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6706 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 6765 Query 241 AAGAGCTATCAATCTGTC 258 |||||||||||||||||| Sbjct 6766 AAGAGCTATCAATCTGTC 6783 >seq641 Length=827 Score = 306 bits (338), Expect = 6e-81 Identities = 221/258 (86%), Gaps = 1/258 (0%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 ||||| |||||| ||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 721 TACTCCCTGGCTCAGTCAGTGTAGCGCGCTTGCGGCCCAGAACATCTAAGGGTATCACAG 662 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||| ||||||||||||||||| | | | ||||||||||||||| || Sbjct 661 ACCTGGTATTGCCTCAAACTTCCGTCGANNNNNNNNNNACAGTCCCTCTAAGAAGTCAAA 602 Query 121 C-ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 |||| ||| || || | |||||||||||||||||||||||||||||||||||||| Sbjct 601 AGACCAGCCAAAGCCGGCCTGACTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 542 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 541 AACCAGACAAATNNCTCCACCAACTAAGAACGGCCATGCACCGCCACCCATAGAATCAAG 482 Query 240 AAAGAGCTATCAATCTGT 257 ||||| |||||||||||| Sbjct 481 AAAGATCTATCAATCTGT 464 >seq490 Length=264 Score = 114 bits (126), Expect = 2e-23 Identities = 74/81 (91%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||| | |||||||| ||||||||||||||||||||| ||||||| |||||| Sbjct 81 ACTCGCTGGCTCAGACAGTGTAGAGCGCGTGCGGCCCAGAACATCGAAGGGCAACACAGA 22 Query 62 CCTGTTATTGCCTCAAACTTC 82 |||| |||||||||||||||| Sbjct 21 CCTGGTATTGCCTCAAACTTC 1 >seq741 Length=287 Score = 84.2 bits (92), Expect = 3e-14 Identities = 51/54 (94%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 205 AAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||| |||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 249 AAGAAAAGCCATGCACCACCACCAATAGAATCAAGAAAGAGCTATCAATCTGTC 196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796793986899