Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq37 468 9e-130 seq400 343 3e-92 seq691 199 7e-49 seq696 134 2e-29 >seq37 Length=8170 Score = 468 bits (518), Expect = 9e-130 Identities = 276/286 (97%), Gaps = 1/286 (0%) Strand=Plus/Plus Query 11 AATTACCATTGGGGCGACGGTC-ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCT 69 |||||| ||| | |||| || |||||||||||||||||||||||||||| |||||||| Sbjct 2727 AATTACTATTACGACGACACTCCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCT 2786 Query 70 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTT 129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2787 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTT 2846 Query 130 CGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTG 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2847 CGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTG 2906 Query 190 GCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCG 249 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 2907 GCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAACTCCG 2966 Query 250 AGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2967 AGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 3012 >seq400 Length=413 Score = 343 bits (380), Expect = 3e-92 Identities = 228/252 (90%), Gaps = 1/252 (0%) Strand=Plus/Plus Query 11 AATTACCATTGGGGCGACGGT-CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCT 69 |||||| ||| || |||| | ||||||||||| |||||||| |||||||| |||||||| Sbjct 162 AATTACTATTAGGCCGACACTGCATCAGTAGGGGAAAACTAAACTGTCTCACGACGGTCT 221 Query 70 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTT 129 ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| Sbjct 222 AAACCCAGCTCACGTTCCCCATTAGTGGGTGAACAATCCAACCCTTACCGAATTCTGCTT 281 Query 130 CGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTG 189 |||| |||||||||||||| |||||||||||||||||| |||||||| || ||||| | Sbjct 282 CGGTGTGATAGGAAGAGCCTACATCGAAGGATCAAAAATCAACGTCGGCATTTACGCTGG 341 Query 190 GCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCG 249 ||||||||||||||||||| |||||||||||||||||||||||||||||||||| || Sbjct 342 CCTGCCACAAGCCAGTTATCGCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAACGCCG 401 Query 250 AGGGACTAAAGG 261 |||||||||||| Sbjct 402 AGGGACTAAAGG 413 >seq691 Length=239 Score = 199 bits (220), Expect = 7e-49 Identities = 123/132 (93%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 164 AAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223 ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| || Sbjct 239 AAAAGCACCGTCGCTATGAACGCTTGGCNNCCACAAGCCAGTTATCCCTGTGGTAACATT 180 Query 224 TCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATG 283 || |||||||||||||||||| | |||||||||||||||||| ||||||||||||||||| Sbjct 179 TCGGGCACCTCTAGCCTCAAACTCCGAGGGACTAAAGGATCGCTAGGCCACACTTTCATG 120 Query 284 GTTTGTATTCAC 295 ||||| |||||| Sbjct 119 GTTTGCATTCAC 108 >seq696 Length=238 Score = 134 bits (148), Expect = 2e-29 Identities = 93/104 (89%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 11 AATTACCATTGGGGCGACGGTC-ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCT 69 |||||| ||| | |||| || |||||||||||||||||| ||||||||| |||||||| Sbjct 104 AATTACTATTACGACGACCCTCCATCAGTAGGGTAAAACTACCCTGTCTCACGACGGTCT 45 Query 70 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGC 113 || |||||||||||||||||| |||||||||||||||||||||| Sbjct 44 AATCCCAGCTCACGTTCCCTAGTAGTGGGTGAACAATCCAACGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854393344224