Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq37 205 1e-50 seq713 122 1e-25 seq641 102 1e-19 seq743 80.6 3e-13 >seq37 Length=8170 Score = 205 bits (226), Expect = 1e-50 Identities = 162/192 (84%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 7170 CTAGAAACCAACAAAATAGAACCGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 7229 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 |||| |||||||||||||||||||||||| ||||||||||| |||||||||| | ||| Sbjct 7230 GGCGATTGCCTGCTTTGAACACTCTAATTTTTTCAAGGTAAAATTCCTGGTTCCCCTGCA 7289 Query 126 CA-CCAATGAAG-GCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 || ||| | ||| |||||| || ||||| |||||| || | || |||| | | || Sbjct 7290 CACCCAGTAAAGAGCATACAGGACCACCAGGAGGTAAGGTCCAGCAAGACAGTGCACTCC 7349 Query 184 GTGAGGCGGACC 195 |||||| ||||| Sbjct 7350 GTGAGGAGGACC 7361 >seq713 Length=287 Score = 122 bits (134), Expect = 1e-25 Identities = 79/87 (91%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 7 TAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG 66 |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 76 TAGAAACCAACAAAATAGAACCGCACGCCCTATTCTATTATTCCATGCTAATGTATTCGG 135 Query 67 GCGTAAGCCTGCTTTGAACACTCTAAT 93 ||| ||||| ||||||||||||||| Sbjct 136 GCGATTGCCTGTTTTGAACACTCTAAT 162 Score = 78.8 bits (86), Expect = 1e-12 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATT 63 ||| ||||||||||||||| ||| ||||||||| |||||||||||||||||||||| Sbjct 217 CTAAAAACCAACAAAATAGAACCGCCCGTCCTATTTTATTATTCCATGCTAATGTATT 160 >seq641 Length=827 Score = 102 bits (112), Expect = 1e-19 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | |||| ||| ||||||||||||||||| ||||||||||| Sbjct 76 CTAGAAACCAACAAAATAGAGCCGCATGTCGTATTCTATTATTCCATGGTAATGTATTCG 17 Query 66 GGCGTAAGCCTGCTTT 81 |||| ||||||||| Sbjct 16 GGCGATGGCCTGCTTT 1 >seq743 Length=288 Score = 80.6 bits (88), Expect = 3e-13 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 |||| | |||||||| |||||||| ||||||||||||||||| |||| |||||||||| Sbjct 72 AAACGACCAAAATAGAACCGCACGTCTTATTCTATTATTCCATGGTAATCTATTCGGGCG 13 Query 70 TAAGCCTGCTTT 81 ||||||||| Sbjct 12 ATGGCCTGCTTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595195508286