Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq37 221 1e-55 seq713 156 4e-36 seq641 143 3e-32 seq743 132 5e-29 seq156 77.0 3e-12 >seq37 Length=8170 Score = 221 bits (244), Expect = 1e-55 Identities = 162/187 (87%), Gaps = 1/187 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||||||||| |||||| ||||||||||||||| ||||||||||||| | || |||||| Sbjct 7283 GGAACCAGGAATTTTACCTTGAAAAAATTAGAGTGTTCAAAGCAGGCAATCGCCCGAATA 7224 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 7223 CATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGATCG- 7165 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||| |||||||| | |||||| ||| | ||||||||||| Sbjct 7164 CCGTAATGATTAATAGGGACGGTCGGGGGCATTGGTATTCCGTTGCTAGAGGTGAAATTC 7105 Query 181 TTGGATT 187 || |||| Sbjct 7104 TTAGATT 7098 >seq713 Length=287 Score = 156 bits (172), Expect = 4e-36 Identities = 132/161 (82%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 27 ATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGGAATAATAGAATAGGA 86 ||||||| ||||||| ||||| | || ||||||||||| ||||||||||||||||||| Sbjct 162 ATTAGAGTGTTCAAAACAGGCAATCGCCCGAATACATTAGCATGGAATAATAGAATAGGG 103 Query 87 CGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGG 146 |||||||||||||||||| |||||||| || || |||||||||| |||| ||| || | Sbjct 102 CGTGCGGTTCTATTTTGTTGGTTTCTATGATCG-CCGTAATGATTAATAGGGACGTTCTG 44 Query 147 GGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 || | |||||| ||| | ||||||||||||| |||| Sbjct 43 TGGCATTGGTATTCCGTTGCTAGAGGTGAAATTCTTAGATT 3 Score = 129 bits (142), Expect = 6e-28 Identities = 109/133 (82%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 53 CTCGAATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCT 112 ||| ||||||||| |||||||||||| ||||||||| ||||||||||||||| ||||| | Sbjct 156 CTCTAATACATTAGCATGGAATAATAAAATAGGACGGGCGGTTCTATTTTGTTGGTTTTT 215 Query 113 AGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGG 172 |||| || |||||||||| |||| || |||||||| | |||||| || | ||| Sbjct 216 AGGATCG-CCGTAATGATTAATAGTGACGGTCGGGGGCATTGGTATTCCGTTTCTAGAGG 274 Query 173 TGAAATTCTTGGA 185 |||||||||| || Sbjct 275 TGAAATTCTTAGA 287 >seq641 Length=827 Score = 143 bits (158), Expect = 3e-32 Identities = 122/149 (82%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 39 AAAGCAGGCCTTTGCTCGAATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTA 98 |||||||||| | || ||||||||||||||||||||||||||||| ||| ||||| |||| Sbjct 1 AAAGCAGGCCATCGCCCGAATACATTACCATGGAATAATAGAATACGACATGCGGCTCTA 60 Query 99 TTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTAT 158 |||||| |||||||||| | |||||||||| |||| || |||||||| | |||| Sbjct 61 TTTTGTTGGTTTCTAGGTTAG-CCGTAATGATTAATAGCGACGGTCGGGGGCATTGGTAT 119 Query 159 TCAATTGTCAAAGGTGAAATTCTTGGATT 187 || ||| | |||||||||| || |||| Sbjct 120 TCCGTTGCTAGAGGTGAAATTTTTAGATT 148 >seq743 Length=288 Score = 132 bits (146), Expect = 5e-29 Identities = 116/144 (81%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 39 AAAGCAGGCCTTTGCTCGAATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTA 98 |||||||||| | || |||||| |||||||||||||||||||||| |||||||||||||| Sbjct 1 AAAGCAGGCCATCGCCCGAATAGATTACCATGGAATAATAGAATAAGACGTGCGGTTCTA 60 Query 99 TTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTAT 158 ||||| |||| |||| || |||||||||| |||| ||| |||||||| | || | Sbjct 61 TTTTGGTCGTTTNNAGGATCG-CCGTAATGATTAATATGGACGGTCGGGGGCATACGTTT 119 Query 159 TCAATTGTCAAAGGTGAAATTCTT 182 || ||| | ||| ||| ||||| Sbjct 120 TCCGTTGCTAGAGGAGAATTTCTT 143 >seq156 Length=42092 Score = 77.0 bits (84), Expect = 3e-12 Identities = 61/72 (85%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 64 TACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCG 123 || |||||||||||| |||| |||||||||||||| || | ||||||||| | || ||| Sbjct 42020 TAGCATGGAATAATAAAATAAGACGTGCGGTTCTAATTCCTTGGTTTCTAGAATCG-CCG 42078 Query 124 TAATGATAAATA 135 ||||||| |||| Sbjct 42079 TAATGATTAATA 42090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511996136160