Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq37 125 1e-26 seq400 105 1e-20 seq659 98.7 2e-18 seq696 87.8 3e-15 >seq37 Length=8170 Score = 125 bits (138), Expect = 1e-26 Identities = 142/185 (77%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || | ||| | ||||||||| |||||| ||||| || | |||| | Sbjct 2719 GTACGAGAGGAACTGCTCA-TTC-GTATAATTGGTATTTGCGTCTGTCCGATCGGGCAAT 2662 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||| ||| || ||||||||||||||||||||||||||||||| | | | Sbjct 2661 GACGCGAAGCTATCATACGCCAGATTATGGCTGAACGCCTCTAAGTCAGAATCTGTACTA 2602 Query 121 GAACGGGGTGATTCT-CTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAA 179 ||| | |||| | ||| |||||| |||| | | ||||||||||||| ||| Sbjct 2601 GAA-ACGACGATTTTGGTCCCGCACATGTTAGTTGTGTTTAAATAGGCTTCGGCTGTGAA 2543 Query 180 CCTTA 184 || || Sbjct 2542 CCATA 2538 >seq400 Length=413 Score = 105 bits (116), Expect = 1e-20 Identities = 92/112 (82%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || | ||| | |||||| || |||||| ||||| || | | || | Sbjct 154 GTACGAGAGGAACTGCTCA-TTC-GTATAATTTGTATTTGCGTCTGTCCGATCGGTCAAT 97 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112 | |||||||||| ||| || |||||||||||||||||||||||||||||| Sbjct 96 GACGCGAAGCTATCATACGCGAGATTATGGCTGAACGCCTCTAAGTCAGAAT 45 >seq659 Length=231 Score = 98.7 bits (108), Expect = 2e-18 Identities = 90/113 (80%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || | | | ||||||||| |||||| ||| | || | |||| | Sbjct 7 GTACGAGAGGAACTGCTCATTG--GTATAATTGGTATTTGCGTCTGGCCGATCGGGCACT 64 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||| ||| ||| || ||||||||||||||||||||||| ||||||| Sbjct 65 GTCGCGAAACTATCATACGCCAGATTATGGCTGAACGCCTCTAAGACAGAATC 117 >seq696 Length=238 Score = 87.8 bits (96), Expect = 3e-15 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 3 ACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGC 62 ||||||||| | || | ||| | ||||||| | ||| || ||||| || | ||| || Sbjct 114 ACGAGAGGAGCTGCTCA-TTC-GTATAATTGATATTTACGTCTGTCAGATCGGGCGATGA 171 Query 63 CGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112 |||||||| | ||| || |||||||||||||||||||||||||||||| Sbjct 172 CGCGAAGCAATCATACGCCAGATTATGGCTGAACGCCTCTAAGTCAGAAT 221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819193817856