Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq37 760 0.0 seq630 682 0.0 seq694 176 1e-41 seq712 170 6e-40 >seq37 Length=8170 Score = 760 bits (842), Expect = 0.0 Identities = 475/507 (94%), Gaps = 3/507 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| Sbjct 7497 GTACTCATTCCAATTACAAGGCCCAAAAGAGCCCTGTATTGTTATTTATTGTCACTACCT 7556 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7557 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 7616 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7617 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 7676 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 7677 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGAAGCATCGCCGGCA 7736 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| |||||||||||| |||||| ||| ||||| | ||||| Sbjct 7737 CAAGGCCATGCGATTCGAGAAGTTATTATGATTCACCATAGAGGGCCGAAACCCATTGGT 7796 Query 301 TTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGG-TTTTTAGCATGTATTAGCTCT 358 ||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||| Sbjct 7797 TTTTTATCTAATAAATACACCCCTTCCAGAAGTCGGGGCTTTTCAGCATGTATTAGCTCT 7856 Query 359 AGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAAT 418 ||||||||||| ||||||||||||| ||| ||| ||||||||||| |||||||||||||| Sbjct 7857 AGAATTACCACAGTTATCCATGTAGCAAGATACCATCAAATAAACTATAACTGATTTAAT 7916 Query 419 GAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTAATCT 477 ||||||||||||||||||| |||| ||| | |||||||||||||||||||||||||||| Sbjct 7917 GAGCCATTCGCAGTTTCACAGTATGAATTCGTTTATACTTAGACATGCATGGCTTAATCT 7976 Query 478 TTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||| Sbjct 7977 TTGAGACAAGCATATGACTACTGGCAG 8003 >seq630 Length=840 Score = 682 bits (756), Expect = 0.0 Identities = 457/507 (90%), Gaps = 3/507 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||| Sbjct 770 GTACTCATTACAATTACAAGGCCCAAAAGAGCCCTGTATTGTTATTTATTGTCACTACCT 711 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 710 CCCCGCGTCGGGATTGGGTAATTTCCGCGCCTGCTGCCTTCCTTGGATGAGGTAGCCGTT 651 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 650 TCTCATGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGCTACCCGTTGATACCATGGTA 591 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 || |||||||||||||||||| |||||||||| | |||||| |||| |||||||||| Sbjct 590 GGNNNCTATCCTACCATCGAAAGCTGATAGGGCATATATTTGAGTGAAGCATCGCCGGCA 531 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| ||||||||| | |||||| |||| ||||| | ||||| Sbjct 530 CAAGGCCATGCGATTCGAGAAGTTATTANNATTCACCATAGAGCGCCGAAACCCATTGGT 471 Query 301 TTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTT-AGCATGTATTAGCTCT 358 |||||| |||||||||||||||| ||| ||||||||||||||| |||||||||||||||| Sbjct 470 TTTTTACCTAATAAATACACCCCCTCCAGAAGTCGGGGTTTTTCAGCATGTATTAGCTCT 411 Query 359 AGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAAT 418 ||||||||||| ||||||||| ||| ||| ||| ||||||||||| |||||||||||||| Sbjct 410 AGAATTACCACAGTTATCCATTTAGCAAGATACCATCAAATAAACTATAACTGATTTAAT 351 Query 419 GAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTAATCT 477 |||||||||||||||||| |||| ||| | ||||||| |||||||||||||||||| | Sbjct 350 CAGCCATTCGCAGTTTCACAGTATCAATTCGTTTATACTAAGACATGCATGGCTTAATTT 291 Query 478 TTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||| ||||||||||| Sbjct 290 TTGAGACAAGCATATAACTACTGGCAG 264 >seq694 Length=205 Score = 176 bits (194), Expect = 1e-41 Identities = 139/167 (83%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 105 GGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACC 164 ||||||||||| |||||||||| ||| | | | ||||| ||| ||||||||||||||| Sbjct 205 GGATGTGGTAGGCGTTTCTCAGTCTCACGATGCCAAATCGCACCATAATTCCCCGTTACC 146 Query 165 CGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAA 224 |||||||||| ||||||||| ||||||||||||| |||| | |||||||||| ||||| | Sbjct 145 CGTTGATACCGTGGTAGGCCTCTATCCTACCATCTAAAGCTAATAGGGCAGATATTTGCA 86 Query 225 TGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGA 271 |||| ||| ||||||||| | | || ||| ||||||||||||| Sbjct 85 TGAAGCATACCCGGCTCAATCCACCGAGAGTCGATAAGTTATTATGA 39 >seq712 Length=221 Score = 170 bits (188), Expect = 6e-40 Identities = 119/136 (88%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||| || | ||| ||||||| |||||||||||| |||| ||||||||||||||| || Sbjct 86 GTAGTCTTCCCACTTACAAGGCCCAAAAGAGCCNNGTATTGTTATTTATTGTCACTAACT 145 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||| ||||||| ||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 146 CCCCGGGTCGGGAATGGGTAATTTGATCGCCTGCTGCCTTCCTTGGATTTGGTAGCCGTT 205 Query 121 TCTCAGGCTCCCTCTC 136 ||||| |||||||||| Sbjct 206 TCTCATGCTCCCTCTC 221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510388233984