Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq95 251 6e-62
seq6 93.3 3e-14
>seq95
Length=57217
Score = 251 bits (278), Expect = 6e-62
Identities = 487/712 (68%), Gaps = 10/712 (1%)
Strand=Plus/Minus
Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061
||||| |||||||| |||||||| ||||| || | ||| || |||| | |||||| | |
Sbjct 51278 GGAAGAGCAAGAGAAGCGAGGTTACAGACGGCAACCTCATCGGGAGAAGAATACTCCATA 51219
Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121
||||| || || ||||||||| | ||||| || | | || ||| || ||||
Sbjct 51218 ATTTCAGTACAGAGATTACTGGACTTAATGGTACCAAGGTGCTTTTGGTTGGACTTGGAG 51159
Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181
||| |||||||| || ||||| || || ||||| || | ||||| |||
Sbjct 51158 TTGGCGGCATCCTTATAACAGATGTAAGGGACACCAGTCTCTGTCTGAGCCTCAAGGATA 51099
Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGT 66241
||| |||||| | || || | || | | || |||| | | |||||
Sbjct 51098 GCGAACCAAAGCTTCTGGGCTTTGATAGTTTTTCTCCCCTTACCCTGCCTCTCGTAGCTC 51039
Query 66242 TCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGA 66301
||||| || | || || ||| || |||| |||| || | ||||||| |||
Sbjct 51038 TCGTAAAGCTTCTCAAATTCTTCTCCGTATACGTCGGCAAGCCCAGGACACTCAGCGGGA 50979
Query 66302 CACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAG 66361
||||| || | ||| || ||||| ||| ||||| ||| || ||||| || ||||||
Sbjct 50978 CACATAAGGGTCCAGTCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGGGATCCAG 50919
Query 66362 AGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCG 66421
||||||||||| ||||| || |||||| |||||| | || || || || | |||||
Sbjct 50918 AGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTCA 50859
Query 66422 AGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGT 66481
| ||| ||||| | || || ||||| || || || ||||||||||| | || |||
Sbjct 50858 ATGAAATCAAATACATCAGCGTGCCAGGGCTCAAGATAGATGGCGAAGGCACCAGGACGC 50799
Query 66482 TTGCCGCCACCTTGGTCGACGTAGCGAGC---GACATTGTTGAAGACACGCAACATCGGT 66538
||| |||||||||||| ||||| ||||| | | | | ||| | || | ||| ||
Sbjct 50798 TTGTTGCCACCTTGGTCAACGTATCGAGCAGTGGCGTCAT--AAG-CTCGGAGCATAGGA 50742
Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCG 66598
| || |||||||| | || ||||| ||| | ||| ||| || || || |||| |
Sbjct 50741 ATGATACCGTTAGAGTAACCGTTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTG 50682
Query 66599 TGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAA-TC-GGCCACTG 66656
|||| | |||||||||||||| || ||||| ||||| ||||||| || | | |
Sbjct 50681 TGAATGTGAAGACCAATACCACCAGCGGTCTTGGAGATCTGAGCACAAGTCTTGAGAGTA 50622
Query 66657 TCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGA 66708
|| | | || || |||||||| ||| |||| |||| | ||| |||||||
Sbjct 50621 TC--GTAGATACCATCAATGGAATCATCCTTCATGGCTACGAGAAAGCATGA 50572
>seq6
Length=242052
Score = 93.3 bits (102), Expect = 3e-14
Identities = 125/174 (72%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 61738 GACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAA 61797
|||||| | |||||||| || ||||| |||||| || |||| || || |||||
Sbjct 183988 GACGCTCTCCCCGTCTCTCTTATCGGTATGAATGCCAAGCTCATGTGCCAATACATTGAG 184047
Query 61798 TTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAAC 61857
||||| ||||||||||| | || | |||||||| || ||| | || | | |||
Sbjct 184048 TTTGTCGCCGACCGTCTTCTTGTTGCTTTGGGTAACGAGAAGATTTGGAACTCTACCAAC 184107
Query 61858 CCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAG 61911
|| || || || ||||| ||||| || || | |||||| | || |||||||||
Sbjct 184108 CCCTTCGACTTTATGGAGATGATCTCCCTCCAAGGCAAGGCCAACTTTTTCGAG 184161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397564225464560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |