Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq95 251 6e-62 seq6 93.3 3e-14 >seq95 Length=57217 Score = 251 bits (278), Expect = 6e-62 Identities = 487/712 (68%), Gaps = 10/712 (1%) Strand=Plus/Minus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 ||||| |||||||| |||||||| ||||| || | ||| || |||| | |||||| | | Sbjct 51278 GGAAGAGCAAGAGAAGCGAGGTTACAGACGGCAACCTCATCGGGAGAAGAATACTCCATA 51219 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121 ||||| || || ||||||||| | ||||| || | | || ||| || |||| Sbjct 51218 ATTTCAGTACAGAGATTACTGGACTTAATGGTACCAAGGTGCTTTTGGTTGGACTTGGAG 51159 Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181 ||| |||||||| || ||||| || || ||||| || | ||||| ||| Sbjct 51158 TTGGCGGCATCCTTATAACAGATGTAAGGGACACCAGTCTCTGTCTGAGCCTCAAGGATA 51099 Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGT 66241 ||| |||||| | || || | || | | || |||| | | ||||| Sbjct 51098 GCGAACCAAAGCTTCTGGGCTTTGATAGTTTTTCTCCCCTTACCCTGCCTCTCGTAGCTC 51039 Query 66242 TCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGA 66301 ||||| || | || || ||| || |||| |||| || | ||||||| ||| Sbjct 51038 TCGTAAAGCTTCTCAAATTCTTCTCCGTATACGTCGGCAAGCCCAGGACACTCAGCGGGA 50979 Query 66302 CACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAG 66361 ||||| || | ||| || ||||| ||| ||||| ||| || ||||| || |||||| Sbjct 50978 CACATAAGGGTCCAGTCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGGGATCCAG 50919 Query 66362 AGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCG 66421 ||||||||||| ||||| || |||||| |||||| | || || || || | ||||| Sbjct 50918 AGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTCA 50859 Query 66422 AGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGT 66481 | ||| ||||| | || || ||||| || || || ||||||||||| | || ||| Sbjct 50858 ATGAAATCAAATACATCAGCGTGCCAGGGCTCAAGATAGATGGCGAAGGCACCAGGACGC 50799 Query 66482 TTGCCGCCACCTTGGTCGACGTAGCGAGC---GACATTGTTGAAGACACGCAACATCGGT 66538 ||| |||||||||||| ||||| ||||| | | | | ||| | || | ||| || Sbjct 50798 TTGTTGCCACCTTGGTCAACGTATCGAGCAGTGGCGTCAT--AAG-CTCGGAGCATAGGA 50742 Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCG 66598 | || |||||||| | || ||||| ||| | ||| ||| || || || |||| | Sbjct 50741 ATGATACCGTTAGAGTAACCGTTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTG 50682 Query 66599 TGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAA-TC-GGCCACTG 66656 |||| | |||||||||||||| || ||||| ||||| ||||||| || | | | Sbjct 50681 TGAATGTGAAGACCAATACCACCAGCGGTCTTGGAGATCTGAGCACAAGTCTTGAGAGTA 50622 Query 66657 TCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGA 66708 || | | || || |||||||| ||| |||| |||| | ||| ||||||| Sbjct 50621 TC--GTAGATACCATCAATGGAATCATCCTTCATGGCTACGAGAAAGCATGA 50572 >seq6 Length=242052 Score = 93.3 bits (102), Expect = 3e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 61738 GACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAA 61797 |||||| | |||||||| || ||||| |||||| || |||| || || ||||| Sbjct 183988 GACGCTCTCCCCGTCTCTCTTATCGGTATGAATGCCAAGCTCATGTGCCAATACATTGAG 184047 Query 61798 TTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAAC 61857 ||||| ||||||||||| | || | |||||||| || ||| | || | | ||| Sbjct 184048 TTTGTCGCCGACCGTCTTCTTGTTGCTTTGGGTAACGAGAAGATTTGGAACTCTACCAAC 184107 Query 61858 CCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAG 61911 || || || || ||||| ||||| || || | |||||| | || ||||||||| Sbjct 184108 CCCTTCGACTTTATGGAGATGATCTCCCTCCAAGGCAAGGCCAACTTTTTCGAG 184161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397564225464560