Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 55.1_202017-07-07] 669 sequences; 18,368,897 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq163 524 3e-146 >seq163 Length=7186 Score = 524 bits (580), Expect = 3e-146 Identities = 529/681 (78%), Gaps = 39/681 (6%) Strand=Plus/Plus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| |||||||| ||| |||||| || ||| | ||||||| |||||| | | ||||||| Sbjct 4810 TTCTACGAGTCGCGTTACTTGGGAGTGTAGCGCAAAATGGGTGGTAAACTCCATCTAAAG 4869 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 ||||||||||| |||||||||||| ||||||| |||| ||||||||||||||||| Sbjct 4870 CTAAATATTGGTGGAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACT 4929 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACT 213 ||||||||||||||||| || |||||||||||||||||||||| || ||| | ||| | Sbjct 4930 TTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGATTGAAGTCAGTCG 4989 Query 214 TGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGTCAGGCCAGCAT 273 || | | | ||| || | || || |||| | || || | | || || ||| Sbjct 4990 TGTCTATTGG-GTTCAGCCAGT---TCTGCTGGTGTATTCC-CTTTAGACGGGTCAACAT 5044 Query 274 CAGCTCGGG-CGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTGTTATAG 332 ||| || | |||| |||||| ||| |||||||| || | |||||| | ||||||||| Sbjct 5045 CAGTTCTGATCGGT-GGATAAGGGCTGGGGGAATGTAGCACTCTTCGGAGTGTGTTATAG 5103 Query 333 CCC-------------------GGG---GTGGAATGCGGCCCGCCTGGA---CTGAGGTC 367 || ||| | ||||||| || ||||| | | | ||| Sbjct 5104 CCTCCTGTCGCATACACTGGTTGGGACTGAGGAATGCAGCTCGCCTTTATGGCCGGGGTT 5163 Query 368 CGCGCTC---CG-GCT-AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACAC 422 ||| | | || ||| |||||| || | ||||| | ||| || ||||||||| ||||| Sbjct 5164 CGCCCACGTTCGAGCTTAGGATGTTGACAAAATGGCTTTAAACGACCCGTCTTGAAACAC 5223 Query 423 GGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAA 482 ||||||||||||||||||| | |||||||||||| ||||||||| || |||||||||||| Sbjct 5224 GGACCAAGGAGTCTAACATATCTGCGAGTGTTTGAGTGTCAAACTCGAGCGCGTAATGAA 5283 Query 483 AGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGAT 542 |||||| | ||| |||| || | || ||||| ||||||||||| ||| | | ||| Sbjct 5284 AGTGAATGTAGGAGGGATCCGC--AAGGAGCACCTTCGACCGATCCGGATCTTCTGTGAT 5341 Query 543 GGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 602 ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 5342 GGATTTGAGTAAGAGCATATATGCTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 5401 Query 603 GTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGT 662 | |||||||| ||||||||||||||||||||| |||| ||||| |||||||||||||||| Sbjct 5402 GCGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGT 5461 Query 663 CAAATTTGGGTATAGGGGCGA 683 | ||||||||||||||||||| Sbjct 5462 CGAATTTGGGTATAGGGGCGA 5482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079985649950