Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157
55.1_202017-07-07] 669 sequences; 18,368,897 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq490 244 8e-60
seq334 89.7 4e-13
>seq490
Length=110099
Score = 244 bits (270), Expect = 8e-60
Identities = 500/734 (68%), Gaps = 12/734 (2%)
Strand=Plus/Plus
Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061
||||| |||||||| || || || |||||||| | || ||||||| | |||||| |
Sbjct 14182 GGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACTCCATG 14241
Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121
||||| || || || |||||| | ||||| || | | || ||| || ||||
Sbjct 14242 ATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGACTTGGAG 14301
Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181
||| ||||||||||| || || || || ||||| ||| | ||| | ||||
Sbjct 14302 TTGGCAGCATCCTTGTAGCAGATATAAGGGACACCAGTCTCGGTTTGAGCCTCGAGGATG 14361
Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGT-TCGTAATG 66240
||| |||||| | || || | || | | |||| | ||| | |||||
Sbjct 14362 GCGAACCAAAGCTTCTGGGCTTTGATAGTTT-TCCTTCCCTTGCCCTGCCTCTCGTAGCT 14420
Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGG 66300
|| || || | ||| || ||| || | || |||| || | || |||| | ||
Sbjct 14421 CTCATAAAGCTTTTCAAATTCTTCGCCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGG 14480
Query 66301 ACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCA 66360
|||||| || | |||||| ||||| ||| ||||| ||| || ||||| | |||||
Sbjct 14481 ACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCA 14540
Query 66361 GAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTC 66420
|||||||||||| ||||| || |||||| |||||| | || || || || | |||||
Sbjct 14541 GAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTC 14600
Query 66421 GAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACG 66480
| ||| ||||| | || || ||||| || || || ||||||||||| | || |||
Sbjct 14601 AATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACG 14660
Query 66481 TTTGCCGCCACCTTGGTCGACGTAGCGAGC---GACATTGTTGAAGACACGCAACATCGG 66537
||| |||||||| || ||||| ||||| | | | || ||| | || | ||| ||
Sbjct 14661 CTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGT--AAG-CTCGGAGCATAGG 14717
Query 66538 TACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATC 66597
| || ||||| || | |||||||| ||| | ||| ||| || || || ||||
Sbjct 14718 AATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATT 14777
Query 66598 GTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACT 66655
||||| | ||||||||||||||||| ||||| ||||| |||||| || | | |
Sbjct 14778 GTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGT 14837
Query 66656 GTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGT 66715
|| | | || || |||||||||||| |||| |||| || |||| ||||||| | |
Sbjct 14838 ATC--GTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATT 14895
Query 66716 TGGGGTTTGGGTGT 66729
|||||| ||| ||
Sbjct 14896 TGGGGTCGGGGAGT 14909
>seq334
Length=290900
Score = 89.7 bits (98), Expect = 4e-13
Identities = 124/174 (71%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 61738 GACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAA 61797
|||||| | |||||||| || ||||| ||||| || |||| || || |||||
Sbjct 63428 GACGCTCTCCCCGTCTCTCTTATCGGTATGAACGCCAAGCTCATGTGCCAATACATTGAG 63369
Query 61798 TTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAAC 61857
||||||||||||||||| | || | |||||| | || ||| | || | |||
Sbjct 63368 TTTGTTGCCGACCGTCTTCTTGTTGCTTTGGGCAACGAGAAGATTTGGAACTCTGCCAAC 63309
Query 61858 CCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAG 61911
|| ||||| || ||||| ||||| || || | |||||| | || |||||||||
Sbjct 63308 CCCTTTGACTTTATGGAGATGATCTCTCTCCAAGGCAAGGCCAACTTTTTCGAG 63255
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397564758454160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |