Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 55.1_202017-07-07] 669 sequences; 18,368,897 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq490 244 8e-60 seq334 89.7 4e-13 >seq490 Length=110099 Score = 244 bits (270), Expect = 8e-60 Identities = 500/734 (68%), Gaps = 12/734 (2%) Strand=Plus/Plus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 ||||| |||||||| || || || |||||||| | || ||||||| | |||||| | Sbjct 14182 GGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACTCCATG 14241 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121 ||||| || || || |||||| | ||||| || | | || ||| || |||| Sbjct 14242 ATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGACTTGGAG 14301 Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181 ||| ||||||||||| || || || || ||||| ||| | ||| | |||| Sbjct 14302 TTGGCAGCATCCTTGTAGCAGATATAAGGGACACCAGTCTCGGTTTGAGCCTCGAGGATG 14361 Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGT-TCGTAATG 66240 ||| |||||| | || || | || | | |||| | ||| | ||||| Sbjct 14362 GCGAACCAAAGCTTCTGGGCTTTGATAGTTT-TCCTTCCCTTGCCCTGCCTCTCGTAGCT 14420 Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGG 66300 || || || | ||| || ||| || | || |||| || | || |||| | || Sbjct 14421 CTCATAAAGCTTTTCAAATTCTTCGCCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGG 14480 Query 66301 ACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCA 66360 |||||| || | |||||| ||||| ||| ||||| ||| || ||||| | ||||| Sbjct 14481 ACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCA 14540 Query 66361 GAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTC 66420 |||||||||||| ||||| || |||||| |||||| | || || || || | ||||| Sbjct 14541 GAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTC 14600 Query 66421 GAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACG 66480 | ||| ||||| | || || ||||| || || || ||||||||||| | || ||| Sbjct 14601 AATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACG 14660 Query 66481 TTTGCCGCCACCTTGGTCGACGTAGCGAGC---GACATTGTTGAAGACACGCAACATCGG 66537 ||| |||||||| || ||||| ||||| | | | || ||| | || | ||| || Sbjct 14661 CTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGT--AAG-CTCGGAGCATAGG 14717 Query 66538 TACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATC 66597 | || ||||| || | |||||||| ||| | ||| ||| || || || |||| Sbjct 14718 AATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATT 14777 Query 66598 GTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACT 66655 ||||| | ||||||||||||||||| ||||| ||||| |||||| || | | | Sbjct 14778 GTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGT 14837 Query 66656 GTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGT 66715 || | | || || |||||||||||| |||| |||| || |||| ||||||| | | Sbjct 14838 ATC--GTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATT 14895 Query 66716 TGGGGTTTGGGTGT 66729 |||||| ||| || Sbjct 14896 TGGGGTCGGGGAGT 14909 >seq334 Length=290900 Score = 89.7 bits (98), Expect = 4e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 61738 GACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAA 61797 |||||| | |||||||| || ||||| ||||| || |||| || || ||||| Sbjct 63428 GACGCTCTCCCCGTCTCTCTTATCGGTATGAACGCCAAGCTCATGTGCCAATACATTGAG 63369 Query 61798 TTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAAC 61857 ||||||||||||||||| | || | |||||| | || ||| | || | ||| Sbjct 63368 TTTGTTGCCGACCGTCTTCTTGTTGCTTTGGGCAACGAGAAGATTTGGAACTCTGCCAAC 63309 Query 61858 CCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAG 61911 || ||||| || ||||| ||||| || || | |||||| | || ||||||||| Sbjct 63308 CCCTTTGACTTTATGGAGATGATCTCTCTCCAAGGCAAGGCCAACTTTTTCGAG 63255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397564758454160