Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq479 524 3e-146
seq559 172 2e-40
>seq479
Length=1937
Score = 524 bits (580), Expect = 3e-146
Identities = 529/681 (78%), Gaps = 39/681 (6%)
Strand=Plus/Minus
Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93
||| |||||||| ||| |||||| || ||| | ||||||| |||||| | | |||||||
Sbjct 1733 TTCTACGAGTCGCGTTACTTGGGAGTGTAGCGCAAAATGGGTGGTAAACTCCATCTAAAG 1674
Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153
||||||||||| |||||||||||| ||||||| |||| |||||||||||||||||
Sbjct 1673 CTAAATATTGGTGGAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACT 1614
Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACT 213
||||||||||||||||| || |||||||||||||||||||||| || ||| | ||| |
Sbjct 1613 TTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGATTGAAGTCAGTCG 1554
Query 214 TGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGTCAGGCCAGCAT 273
|| | | | ||| || | || || |||| | || || | | || || |||
Sbjct 1553 TGTCTATTGG-GTTCAGCCAGT---TCTGCTGGTGTATTCC-CTTTAGACGGGTCAACAT 1499
Query 274 CAGCTCGGG-CGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTGTTATAG 332
||| || | |||| |||||| ||| |||||||| || | |||||| | |||||||||
Sbjct 1498 CAGTTCTGATCGGT-GGATAAGGGCTGGGGGAATGTAGCACTCTTCGGAGTGTGTTATAG 1440
Query 333 CCC-------------------GGG---GTGGAATGCGGCCCGCCTGGA---CTGAGGTC 367
|| ||| | ||||||| || ||||| | | | |||
Sbjct 1439 CCTCCTGTCGCATACACTGGTTGGGACTGAGGAATGCAGCTCGCCTTTATGGCCGGGGTT 1380
Query 368 CGCGCTC---CG-GCT-AGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACAC 422
||| | | || ||| |||||| || | ||||| | ||| || ||||||||| |||||
Sbjct 1379 CGCCCACGTTCGAGCTTAGGATGTTGACAAAATGGCTTTAAACGACCCGTCTTGAAACAC 1320
Query 423 GGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAA 482
||||||||||||||||||| | |||||||||||| ||||||||| || ||||||||||||
Sbjct 1319 GGACCAAGGAGTCTAACATATCTGCGAGTGTTTGAGTGTCAAACTCGAGCGCGTAATGAA 1260
Query 483 AGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGAT 542
|||||| | ||| |||| || | || ||||| ||||||||||| ||| | | |||
Sbjct 1259 AGTGAATGTAGGAGGGATCCGC--AAGGAGCACCTTCGACCGATCCGGATCTTCTGTGAT 1202
Query 543 GGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 602
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1201 GGATTTGAGTAAGAGCATATATGCTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 1142
Query 603 GTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGT 662
| |||||||| ||||||||||||||||||||| |||| ||||| ||||||||||||||||
Sbjct 1141 GCGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGT 1082
Query 663 CAAATTTGGGTATAGGGGCGA 683
| |||||||||||||||||||
Sbjct 1081 CGAATTTGGGTATAGGGGCGA 1061
>seq559
Length=5391
Score = 172 bits (190), Expect = 2e-40
Identities = 106/113 (94%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626
|||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||
Sbjct 113 TGGGACCCGAAAGATGGTGAGCTATGCCTGAATAGGGCGAAGCCAGGGGAAACTCTGGTG 54
Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679
|||||||| |||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 53 GAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGGGTATAGGG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079987880750
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |