Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq524 131 3e-28 seq523 125 1e-26 seq520 125 1e-26 seq457 125 1e-26 seq519 122 1e-25 seq446 122 1e-25 >seq524 Length=1336 Score = 131 bits (144), Expect = 3e-28 Identities = 143/185 (77%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || | ||| | ||||||||| |||||| ||||| || | |||| | Sbjct 1155 GTACGAGAGGAACTGCTCA-TTC-GTATAATTGGTATTTGCGTCTGTCCGATCGGGCAAT 1098 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 |||||||||||| ||| || ||||||||||||||||||||||||||||||| | | | Sbjct 1097 GCCGCGAAGCTATCATACGCCAGATTATGGCTGAACGCCTCTAAGTCAGAATCTGTACTA 1038 Query 121 GAACGGGGTGATTCT-CTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAA 179 ||| | |||| | ||| |||||| |||| | | ||||||||||||| ||| Sbjct 1037 GAA-ACGACGATTTTGGTCCCGCACATGTTAGTTGTGTTTAAATAGGCTTCGGCTGTGAA 979 Query 180 CCTTA 184 || || Sbjct 978 CCATA 974 >seq523 Length=1452 Score = 125 bits (138), Expect = 1e-26 Identities = 142/185 (77%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || | ||| | ||||||||| |||||| ||||| || | |||| | Sbjct 1257 GTACGAGAGGAACTGCTCA-TTC-GTATAATTGGTATTTGCGTCTGTCCGATCGGGCAAT 1200 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||| ||| || ||||||||||||||||||||||||||||||| | | | Sbjct 1199 GACGCGAAGCTATCATACGCCAGATTATGGCTGAACGCCTCTAAGTCAGAATCTGTACTA 1140 Query 121 GAACGGGGTGATTCT-CTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAA 179 ||| | |||| | ||| |||||| |||| | | ||||||||||||| ||| Sbjct 1139 GAA-ACGACGATTTTGGTCCCGCACATGTTAGTTGTGTTTAAATAGGCTTCGGCTGTGAA 1081 Query 180 CCTTA 184 || || Sbjct 1080 CCATA 1076 >seq520 Length=2390 Score = 125 bits (138), Expect = 1e-26 Identities = 142/185 (77%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || | ||| | ||||||||| |||||| ||||| || | |||| | Sbjct 1528 GTACGAGAGGAACTGCTCA-TTC-GTATAATTGGTATTTGCGTCTGTCCGATCGGGCAAT 1471 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||| ||| || ||||||||||||||||||||||||||||||| | | | Sbjct 1470 GACGCGAAGCTATCATACGCCAGATTATGGCTGAACGCCTCTAAGTCAGAATCTGTACTA 1411 Query 121 GAACGGGGTGATTCT-CTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAA 179 ||| | |||| | ||| |||||| |||| | | ||||||||||||| ||| Sbjct 1410 GAA-ACGACGATTTTGGTCCCGCACATGTTAGTTGTGTTTAAATAGGCTTCGGCTGTGAA 1352 Query 180 CCTTA 184 || || Sbjct 1351 CCATA 1347 >seq457 Length=1560 Score = 125 bits (138), Expect = 1e-26 Identities = 142/185 (77%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || | ||| | ||||||||| |||||| ||||| || | |||| | Sbjct 698 GTACGAGAGGAACTGCTCA-TTC-GTATAATTGGTATTTGCGTCTGTCCGATCGGGCAAT 641 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||| ||| || ||||||||||||||||||||||||||||||| | | | Sbjct 640 GACGCGAAGCTATCATACGCCAGATTATGGCTGAACGCCTCTAAGTCAGAATCTGTACTA 581 Query 121 GAACGGGGTGATTCT-CTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAA 179 ||| | |||| | ||| |||||| |||| | | ||||||||||||| ||| Sbjct 580 GAA-ACGACGATTTTGGTCCCGCACATGTTAGTTGTGTTTAAATAGGCTTCGGCTGTGAA 522 Query 180 CCTTA 184 || || Sbjct 521 CCATA 517 >seq519 Length=2629 Score = 122 bits (134), Expect = 1e-25 Identities = 141/185 (76%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || | ||| | ||||||||| |||||| ||||| || | |||| | Sbjct 1694 GTACGAGAGGAACTGCTCA-TTC-GTATAATTGGTATTTGCGTCTGTCCGATCGGGCAAT 1637 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||| ||| || ||||||||||||||||||||||||||||| | | | | Sbjct 1636 GACGCGAAGCTATCATACGCCAGATTATGGCTGAACGCCTCTAAGTCAGAAACTGTACTA 1577 Query 121 GAACGGGGTGATTCT-CTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAA 179 ||| | |||| | ||| |||||| |||| | | ||||||||||||| ||| Sbjct 1576 GAA-ACGACGATTTTGGTCCCGCACATGTTAGTTGTGTTTAAATAGGCTTCGGCTGTGAA 1518 Query 180 CCTTA 184 || || Sbjct 1517 CCATA 1513 >seq446 Length=2458 Score = 122 bits (134), Expect = 1e-25 Identities = 141/185 (76%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || | ||| | ||||||||| |||||| ||||| || | |||| | Sbjct 741 GTACGAGAGGAACTGCTCA-TTC-GTATAATTGGTATTTGCGTCTGTCCGATCGGGCAAT 684 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||| ||| || ||||||||||||||||||||||||||||| | | | | Sbjct 683 GACGCGAAGCTATCATACGCCAGATTATGGCTGAACGCCTCTAAGTCAGAAACTGTACTA 624 Query 121 GAACGGGGTGATTCT-CTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAA 179 ||| | |||| | ||| |||||| |||| | | ||||||||||||| ||| Sbjct 623 GAA-ACGACGATTTTGGTCCCGCACATGTTAGTTGTGTTTAAATAGGCTTCGGCTGTGAA 565 Query 180 CCTTA 184 || || Sbjct 564 CCATA 560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819195516160