Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq524 131 3e-28
seq523 125 1e-26
seq520 125 1e-26
seq457 125 1e-26
seq519 122 1e-25
seq446 122 1e-25
>seq524
Length=1336
Score = 131 bits (144), Expect = 3e-28
Identities = 143/185 (77%), Gaps = 4/185 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| || | ||| | ||||||||| |||||| ||||| || | |||| |
Sbjct 1155 GTACGAGAGGAACTGCTCA-TTC-GTATAATTGGTATTTGCGTCTGTCCGATCGGGCAAT 1098
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
|||||||||||| ||| || ||||||||||||||||||||||||||||||| | | |
Sbjct 1097 GCCGCGAAGCTATCATACGCCAGATTATGGCTGAACGCCTCTAAGTCAGAATCTGTACTA 1038
Query 121 GAACGGGGTGATTCT-CTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAA 179
||| | |||| | ||| |||||| |||| | | ||||||||||||| |||
Sbjct 1037 GAA-ACGACGATTTTGGTCCCGCACATGTTAGTTGTGTTTAAATAGGCTTCGGCTGTGAA 979
Query 180 CCTTA 184
|| ||
Sbjct 978 CCATA 974
>seq523
Length=1452
Score = 125 bits (138), Expect = 1e-26
Identities = 142/185 (77%), Gaps = 4/185 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| || | ||| | ||||||||| |||||| ||||| || | |||| |
Sbjct 1257 GTACGAGAGGAACTGCTCA-TTC-GTATAATTGGTATTTGCGTCTGTCCGATCGGGCAAT 1200
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||| ||| || ||||||||||||||||||||||||||||||| | | |
Sbjct 1199 GACGCGAAGCTATCATACGCCAGATTATGGCTGAACGCCTCTAAGTCAGAATCTGTACTA 1140
Query 121 GAACGGGGTGATTCT-CTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAA 179
||| | |||| | ||| |||||| |||| | | ||||||||||||| |||
Sbjct 1139 GAA-ACGACGATTTTGGTCCCGCACATGTTAGTTGTGTTTAAATAGGCTTCGGCTGTGAA 1081
Query 180 CCTTA 184
|| ||
Sbjct 1080 CCATA 1076
>seq520
Length=2390
Score = 125 bits (138), Expect = 1e-26
Identities = 142/185 (77%), Gaps = 4/185 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| || | ||| | ||||||||| |||||| ||||| || | |||| |
Sbjct 1528 GTACGAGAGGAACTGCTCA-TTC-GTATAATTGGTATTTGCGTCTGTCCGATCGGGCAAT 1471
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||| ||| || ||||||||||||||||||||||||||||||| | | |
Sbjct 1470 GACGCGAAGCTATCATACGCCAGATTATGGCTGAACGCCTCTAAGTCAGAATCTGTACTA 1411
Query 121 GAACGGGGTGATTCT-CTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAA 179
||| | |||| | ||| |||||| |||| | | ||||||||||||| |||
Sbjct 1410 GAA-ACGACGATTTTGGTCCCGCACATGTTAGTTGTGTTTAAATAGGCTTCGGCTGTGAA 1352
Query 180 CCTTA 184
|| ||
Sbjct 1351 CCATA 1347
>seq457
Length=1560
Score = 125 bits (138), Expect = 1e-26
Identities = 142/185 (77%), Gaps = 4/185 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| || | ||| | ||||||||| |||||| ||||| || | |||| |
Sbjct 698 GTACGAGAGGAACTGCTCA-TTC-GTATAATTGGTATTTGCGTCTGTCCGATCGGGCAAT 641
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||| ||| || ||||||||||||||||||||||||||||||| | | |
Sbjct 640 GACGCGAAGCTATCATACGCCAGATTATGGCTGAACGCCTCTAAGTCAGAATCTGTACTA 581
Query 121 GAACGGGGTGATTCT-CTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAA 179
||| | |||| | ||| |||||| |||| | | ||||||||||||| |||
Sbjct 580 GAA-ACGACGATTTTGGTCCCGCACATGTTAGTTGTGTTTAAATAGGCTTCGGCTGTGAA 522
Query 180 CCTTA 184
|| ||
Sbjct 521 CCATA 517
>seq519
Length=2629
Score = 122 bits (134), Expect = 1e-25
Identities = 141/185 (76%), Gaps = 4/185 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| || | ||| | ||||||||| |||||| ||||| || | |||| |
Sbjct 1694 GTACGAGAGGAACTGCTCA-TTC-GTATAATTGGTATTTGCGTCTGTCCGATCGGGCAAT 1637
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||| ||| || ||||||||||||||||||||||||||||| | | | |
Sbjct 1636 GACGCGAAGCTATCATACGCCAGATTATGGCTGAACGCCTCTAAGTCAGAAACTGTACTA 1577
Query 121 GAACGGGGTGATTCT-CTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAA 179
||| | |||| | ||| |||||| |||| | | ||||||||||||| |||
Sbjct 1576 GAA-ACGACGATTTTGGTCCCGCACATGTTAGTTGTGTTTAAATAGGCTTCGGCTGTGAA 1518
Query 180 CCTTA 184
|| ||
Sbjct 1517 CCATA 1513
>seq446
Length=2458
Score = 122 bits (134), Expect = 1e-25
Identities = 141/185 (76%), Gaps = 4/185 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| || | ||| | ||||||||| |||||| ||||| || | |||| |
Sbjct 741 GTACGAGAGGAACTGCTCA-TTC-GTATAATTGGTATTTGCGTCTGTCCGATCGGGCAAT 684
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||| ||| || ||||||||||||||||||||||||||||| | | | |
Sbjct 683 GACGCGAAGCTATCATACGCCAGATTATGGCTGAACGCCTCTAAGTCAGAAACTGTACTA 624
Query 121 GAACGGGGTGATTCT-CTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAA 179
||| | |||| | ||| |||||| |||| | | ||||||||||||| |||
Sbjct 623 GAA-ACGACGATTTTGGTCCCGCACATGTTAGTTGTGTTTAAATAGGCTTCGGCTGTGAA 565
Query 180 CCTTA 184
|| ||
Sbjct 564 CCATA 560
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819195516160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |