Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq176 259 4e-64
seq407 89.7 4e-13
>seq176
Length=37993
Score = 259 bits (286), Expect = 4e-64
Identities = 507/740 (69%), Gaps = 12/740 (2%)
Strand=Plus/Minus
Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061
||||| |||||||| || || || |||||||| | || ||||||| | |||||| |
Sbjct 24301 GGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACTCCATG 24242
Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121
||||| || || || |||||| | ||||| || | | || ||| || ||||
Sbjct 24241 ATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGACTTGGAG 24182
Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181
||| ||||||||||| ||||| || ||||| || ||| | ||| | ||||
Sbjct 24181 TTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCGGTTTCGGTTTGAGCCTCGAGGATG 24122
Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGT-TCGTAATG 66240
||| |||||| | || || | || | | |||| | ||| | |||||
Sbjct 24121 GCGAACCAAAGCTTCTGGGCTTTGATAGTTT-TCCTTCCCTTGCCCTGCCTCTCGTAGCT 24063
Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGG 66300
|| || || | ||| || |||||| |||| |||| || | || |||| | ||
Sbjct 24062 CTCATAAAGCTTTTCAAATTCTTCACCGTATACGTCGGCAAGTCCAGGGCACTCGGCGGG 24003
Query 66301 ACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCA 66360
|||||| || | |||||| ||||| ||| ||||| ||| || ||||| | |||||
Sbjct 24002 ACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCA 23943
Query 66361 GAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTC 66420
|||||||||||| || || || |||||| |||||| | || || || || | |||||
Sbjct 23942 GAGGGCGTAGAAAAGGTCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTC 23883
Query 66421 GAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACG 66480
| ||| ||||| | || || ||||| || || || ||||||||||| | || |||
Sbjct 23882 AATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACG 23823
Query 66481 TTTGCCGCCACCTTGGTCGACGTAGCGAGC---GACATTGTTGAAGACACGCAACATCGG 66537
||| ||||||||||| ||||| ||||| | | | || ||| | || | ||| ||
Sbjct 23822 CTTGTTACCACCTTGGTCAACGTATCGAGCTGTGGCGTCGT--AAG-CTCGGAGCATAGG 23766
Query 66538 TACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATC 66597
| || ||||| || | |||||||| ||| | ||| ||| || || || ||||
Sbjct 23765 AATGATACCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATT 23706
Query 66598 GTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACT 66655
||||| | ||||||||||||||||| ||||| ||||| |||||| || | | |
Sbjct 23705 GTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGT 23646
Query 66656 GTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGT 66715
|| | | || || |||||||||||| |||| |||| || |||| ||||||| | |
Sbjct 23645 ATC--GTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATT 23588
Query 66716 TGGGGTTTGGGTGTGGCGGC 66735
|||||| ||| || ||||
Sbjct 23587 TGGGGTCGGGGAGTACCGGC 23568
>seq407
Length=246863
Score = 89.7 bits (98), Expect = 4e-13
Identities = 124/174 (71%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 61738 GACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAA 61797
|||||| | |||||||| || ||||| ||||| || |||| || || |||||
Sbjct 18906 GACGCTCTCCCCGTCTCTCTTATCGGTATGAACGCCAAGCTCATGTGCCAATACATTGAG 18847
Query 61798 TTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAAC 61857
||||||||||||||||| | || | |||||| | || ||| | || | |||
Sbjct 18846 TTTGTTGCCGACCGTCTTCTTGTTGCTTTGGGCAACGAGAAGATTTGGAACTCTGCCAAC 18787
Query 61858 CCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAG 61911
|| ||||| || ||||| ||||| || || | |||||| | || |||||||||
Sbjct 18786 CCCTTTGACTTTATGGAGATGATCTCTCTCCAAGGCAAGGCCAACTTTTTCGAG 18733
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397565262371600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |