Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq176 259 4e-64 seq407 89.7 4e-13 >seq176 Length=37993 Score = 259 bits (286), Expect = 4e-64 Identities = 507/740 (69%), Gaps = 12/740 (2%) Strand=Plus/Minus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 ||||| |||||||| || || || |||||||| | || ||||||| | |||||| | Sbjct 24301 GGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACTCCATG 24242 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121 ||||| || || || |||||| | ||||| || | | || ||| || |||| Sbjct 24241 ATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGACTTGGAG 24182 Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATG 66181 ||| ||||||||||| ||||| || ||||| || ||| | ||| | |||| Sbjct 24181 TTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCGGTTTCGGTTTGAGCCTCGAGGATG 24122 Query 66182 GCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGT-TCGTAATG 66240 ||| |||||| | || || | || | | |||| | ||| | ||||| Sbjct 24121 GCGAACCAAAGCTTCTGGGCTTTGATAGTTT-TCCTTCCCTTGCCCTGCCTCTCGTAGCT 24063 Query 66241 TTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGG 66300 || || || | ||| || |||||| |||| |||| || | || |||| | || Sbjct 24062 CTCATAAAGCTTTTCAAATTCTTCACCGTATACGTCGGCAAGTCCAGGGCACTCGGCGGG 24003 Query 66301 ACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCA 66360 |||||| || | |||||| ||||| ||| ||||| ||| || ||||| | ||||| Sbjct 24002 ACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCA 23943 Query 66361 GAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTC 66420 |||||||||||| || || || |||||| |||||| | || || || || | ||||| Sbjct 23942 GAGGGCGTAGAAAAGGTCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTC 23883 Query 66421 GAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACG 66480 | ||| ||||| | || || ||||| || || || ||||||||||| | || ||| Sbjct 23882 AATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACG 23823 Query 66481 TTTGCCGCCACCTTGGTCGACGTAGCGAGC---GACATTGTTGAAGACACGCAACATCGG 66537 ||| ||||||||||| ||||| ||||| | | | || ||| | || | ||| || Sbjct 23822 CTTGTTACCACCTTGGTCAACGTATCGAGCTGTGGCGTCGT--AAG-CTCGGAGCATAGG 23766 Query 66538 TACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATC 66597 | || ||||| || | |||||||| ||| | ||| ||| || || || |||| Sbjct 23765 AATGATACCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATT 23706 Query 66598 GTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACT 66655 ||||| | ||||||||||||||||| ||||| ||||| |||||| || | | | Sbjct 23705 GTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGT 23646 Query 66656 GTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGT 66715 || | | || || |||||||||||| |||| |||| || |||| ||||||| | | Sbjct 23645 ATC--GTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATT 23588 Query 66716 TGGGGTTTGGGTGTGGCGGC 66735 |||||| ||| || |||| Sbjct 23587 TGGGGTCGGGGAGTACCGGC 23568 >seq407 Length=246863 Score = 89.7 bits (98), Expect = 4e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 61738 GACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAA 61797 |||||| | |||||||| || ||||| ||||| || |||| || || ||||| Sbjct 18906 GACGCTCTCCCCGTCTCTCTTATCGGTATGAACGCCAAGCTCATGTGCCAATACATTGAG 18847 Query 61798 TTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAAC 61857 ||||||||||||||||| | || | |||||| | || ||| | || | ||| Sbjct 18846 TTTGTTGCCGACCGTCTTCTTGTTGCTTTGGGCAACGAGAAGATTTGGAACTCTGCCAAC 18787 Query 61858 CCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAG 61911 || ||||| || ||||| ||||| || || | |||||| | || ||||||||| Sbjct 18786 CCCTTTGACTTTATGGAGATGATCTCTCTCCAAGGCAAGGCCAACTTTTTCGAG 18733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397565262371600